Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS31275

Experiment: Sucrose (C) and Ammonium chloride (N); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS31275 and PFLU_RS11430 are separated by 133 nucleotides PFLU_RS31275: PFLU_RS31275 - hypothetical protein, at 2,536,328 to 2,536,510 _RS31275 PFLU_RS11430: PFLU_RS11430 - bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD, at 2,536,644 to 2,537,636 _RS11430 Position (kb) 2536 2537Strain fitness (log2 ratio) -2 -1 0 1 2at 2536.285 kb on + strandat 2536.285 kb on + strandat 2536.285 kb on + strandat 2536.285 kb on + strandat 2536.286 kb on - strandat 2536.286 kb on - strandat 2536.286 kb on - strandat 2536.286 kb on - strandat 2536.286 kb on - strandat 2536.286 kb on - strandat 2536.289 kb on + strandat 2536.289 kb on + strandat 2536.289 kb on + strandat 2536.290 kb on - strandat 2536.290 kb on - strandat 2536.290 kb on - strandat 2536.290 kb on - strandat 2536.290 kb on - strandat 2536.290 kb on - strandat 2536.316 kb on - strandat 2536.316 kb on - strandat 2536.316 kb on - strandat 2536.361 kb on + strand, within PFLU_RS31275at 2536.362 kb on - strand, within PFLU_RS31275at 2536.566 kb on - strandat 2536.611 kb on + strandat 2536.611 kb on + strandat 2536.612 kb on - strandat 2536.612 kb on - strandat 2536.621 kb on + strandat 2536.621 kb on + strandat 2536.622 kb on - strandat 2536.656 kb on + strandat 2536.657 kb on - strandat 2536.747 kb on + strand, within PFLU_RS11430at 2536.747 kb on + strand, within PFLU_RS11430at 2536.747 kb on + strand, within PFLU_RS11430at 2536.747 kb on + strand, within PFLU_RS11430at 2536.747 kb on + strand, within PFLU_RS11430at 2536.747 kb on + strand, within PFLU_RS11430at 2536.748 kb on - strand, within PFLU_RS11430at 2536.748 kb on - strand, within PFLU_RS11430at 2536.748 kb on - strand, within PFLU_RS11430at 2536.748 kb on - strand, within PFLU_RS11430at 2536.748 kb on - strand, within PFLU_RS11430at 2536.748 kb on - strand, within PFLU_RS11430at 2536.748 kb on - strand, within PFLU_RS11430at 2536.748 kb on - strand, within PFLU_RS11430at 2536.748 kb on - strand, within PFLU_RS11430at 2537.406 kb on - strand, within PFLU_RS11430at 2537.416 kb on + strand, within PFLU_RS11430at 2537.467 kb on + strand, within PFLU_RS11430

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C) and Ammonium chloride (N); with MOPS
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2,536,285 + +0.9
2,536,285 + +0.4
2,536,285 + +0.5
2,536,285 + -0.1
2,536,286 - -2.0
2,536,286 - -1.4
2,536,286 - -0.7
2,536,286 - -0.0
2,536,286 - +0.5
2,536,286 - +0.1
2,536,289 + +1.2
2,536,289 + +0.1
2,536,289 + -0.1
2,536,290 - -1.7
2,536,290 - +0.0
2,536,290 - -1.4
2,536,290 - -1.8
2,536,290 - -0.9
2,536,290 - +1.3
2,536,316 - +0.1
2,536,316 - +0.9
2,536,316 - +0.6
2,536,361 + PFLU_RS31275 0.18 -0.6
2,536,362 - PFLU_RS31275 0.19 -0.8
2,536,566 - +0.5
2,536,611 + -2.7
2,536,611 + -0.7
2,536,612 - -0.3
2,536,612 - +0.9
2,536,621 + +1.1
2,536,621 + +0.2
2,536,622 - -1.9
2,536,656 + +0.4
2,536,657 - +0.3
2,536,747 + PFLU_RS11430 0.10 +1.1
2,536,747 + PFLU_RS11430 0.10 -1.0
2,536,747 + PFLU_RS11430 0.10 +0.4
2,536,747 + PFLU_RS11430 0.10 -0.1
2,536,747 + PFLU_RS11430 0.10 -1.5
2,536,747 + PFLU_RS11430 0.10 +0.3
2,536,748 - PFLU_RS11430 0.10 +0.4
2,536,748 - PFLU_RS11430 0.10 +1.1
2,536,748 - PFLU_RS11430 0.10 +1.8
2,536,748 - PFLU_RS11430 0.10 -1.1
2,536,748 - PFLU_RS11430 0.10 +1.4
2,536,748 - PFLU_RS11430 0.10 +0.9
2,536,748 - PFLU_RS11430 0.10 +0.5
2,536,748 - PFLU_RS11430 0.10 +1.4
2,536,748 - PFLU_RS11430 0.10 -0.2
2,537,406 - PFLU_RS11430 0.77 +0.7
2,537,416 + PFLU_RS11430 0.78 -0.8
2,537,467 + PFLU_RS11430 0.83 -1.3

Or see this region's nucleotide sequence