Experiment: Sucrose (C) and Ammonium chloride (N); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS22585 and PFLU_RS22590 are separated by 26 nucleotides PFLU_RS22590 and PFLU_RS22595 are separated by 60 nucleotides PFLU_RS22595 and PFLU_RS22600 are separated by 107 nucleotides PFLU_RS22600 and PFLU_RS22605 are separated by 87 nucleotides
PFLU_RS22585: PFLU_RS22585 - bifunctional protein-serine/threonine kinase/phosphatase, at 5,085,067 to 5,086,737
_RS22585
PFLU_RS22590: PFLU_RS22590 - uroporphyrinogen-III C-methyltransferase, at 5,086,764 to 5,087,507
_RS22590
PFLU_RS22595: PFLU_RS22595 - OmpA family protein, at 5,087,568 to 5,088,548
_RS22595
PFLU_RS22600: PFLU_RS22600 - RNA polymerase sigma factor SigX, at 5,088,656 to 5,089,246
_RS22600
PFLU_RS22605: PFLU_RS22605 - mechanosensitive ion channel, at 5,089,334 to 5,090,158
_RS22605
Position (kb) 5087
5088
5089 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5086.717 kb on + strand at 5086.718 kb on - strand at 5086.718 kb on - strand at 5086.718 kb on - strand at 5086.747 kb on + strand at 5086.747 kb on + strand at 5086.747 kb on + strand at 5086.748 kb on - strand at 5086.748 kb on - strand at 5086.748 kb on - strand at 5086.748 kb on - strand at 5086.964 kb on + strand, within PFLU_RS22590 at 5086.964 kb on + strand, within PFLU_RS22590 at 5086.965 kb on - strand, within PFLU_RS22590 at 5086.965 kb on - strand, within PFLU_RS22590 at 5086.965 kb on - strand, within PFLU_RS22590 at 5086.986 kb on + strand, within PFLU_RS22590 at 5086.987 kb on - strand, within PFLU_RS22590 at 5087.111 kb on + strand, within PFLU_RS22590 at 5087.262 kb on + strand, within PFLU_RS22590 at 5087.262 kb on + strand, within PFLU_RS22590 at 5087.262 kb on + strand, within PFLU_RS22590 at 5087.262 kb on + strand, within PFLU_RS22590 at 5087.262 kb on + strand, within PFLU_RS22590 at 5087.262 kb on + strand, within PFLU_RS22590 at 5087.262 kb on + strand, within PFLU_RS22590 at 5087.262 kb on + strand, within PFLU_RS22590 at 5087.262 kb on + strand, within PFLU_RS22590 at 5087.262 kb on + strand, within PFLU_RS22590 at 5087.262 kb on + strand, within PFLU_RS22590 at 5087.262 kb on + strand, within PFLU_RS22590 at 5087.262 kb on + strand, within PFLU_RS22590 at 5087.262 kb on + strand, within PFLU_RS22590 at 5087.262 kb on + strand, within PFLU_RS22590 at 5087.262 kb on + strand, within PFLU_RS22590 at 5087.262 kb on + strand, within PFLU_RS22590 at 5087.262 kb on + strand, within PFLU_RS22590 at 5087.262 kb on + strand, within PFLU_RS22590 at 5087.262 kb on + strand, within PFLU_RS22590 at 5087.262 kb on + strand, within PFLU_RS22590 at 5087.263 kb on - strand, within PFLU_RS22590 at 5087.263 kb on - strand, within PFLU_RS22590 at 5087.263 kb on - strand, within PFLU_RS22590 at 5087.263 kb on - strand, within PFLU_RS22590 at 5087.263 kb on - strand, within PFLU_RS22590 at 5087.263 kb on - strand, within PFLU_RS22590 at 5087.263 kb on - strand, within PFLU_RS22590 at 5087.263 kb on - strand, within PFLU_RS22590 at 5087.263 kb on - strand, within PFLU_RS22590 at 5087.263 kb on - strand, within PFLU_RS22590 at 5087.263 kb on - strand, within PFLU_RS22590 at 5087.263 kb on - strand, within PFLU_RS22590 at 5087.263 kb on - strand, within PFLU_RS22590 at 5087.263 kb on - strand, within PFLU_RS22590 at 5087.327 kb on + strand, within PFLU_RS22590 at 5087.400 kb on + strand, within PFLU_RS22590 at 5087.400 kb on + strand, within PFLU_RS22590 at 5087.400 kb on + strand, within PFLU_RS22590 at 5087.400 kb on + strand, within PFLU_RS22590 at 5087.400 kb on + strand, within PFLU_RS22590 at 5087.400 kb on + strand, within PFLU_RS22590 at 5087.400 kb on + strand, within PFLU_RS22590 at 5087.400 kb on + strand, within PFLU_RS22590 at 5087.400 kb on + strand, within PFLU_RS22590 at 5087.400 kb on + strand, within PFLU_RS22590 at 5087.400 kb on + strand, within PFLU_RS22590 at 5087.400 kb on + strand, within PFLU_RS22590 at 5087.400 kb on + strand, within PFLU_RS22590 at 5087.400 kb on + strand, within PFLU_RS22590 at 5087.400 kb on + strand, within PFLU_RS22590 at 5087.400 kb on + strand, within PFLU_RS22590 at 5087.400 kb on + strand, within PFLU_RS22590 at 5087.400 kb on + strand, within PFLU_RS22590 at 5087.400 kb on + strand, within PFLU_RS22590 at 5087.401 kb on - strand, within PFLU_RS22590 at 5087.401 kb on - strand, within PFLU_RS22590 at 5087.401 kb on - strand, within PFLU_RS22590 at 5087.401 kb on - strand, within PFLU_RS22590 at 5087.401 kb on - strand, within PFLU_RS22590 at 5087.401 kb on - strand, within PFLU_RS22590 at 5087.401 kb on - strand, within PFLU_RS22590 at 5087.401 kb on - strand, within PFLU_RS22590 at 5087.401 kb on - strand, within PFLU_RS22590 at 5087.401 kb on - strand, within PFLU_RS22590 at 5087.401 kb on - strand, within PFLU_RS22590 at 5087.401 kb on - strand, within PFLU_RS22590 at 5087.401 kb on - strand, within PFLU_RS22590 at 5087.401 kb on - strand, within PFLU_RS22590 at 5087.401 kb on - strand, within PFLU_RS22590 at 5087.401 kb on - strand, within PFLU_RS22590 at 5087.401 kb on - strand, within PFLU_RS22590 at 5087.481 kb on + strand at 5087.482 kb on - strand at 5087.498 kb on - strand at 5087.539 kb on - strand at 5087.565 kb on + strand at 5087.565 kb on + strand at 5087.565 kb on + strand at 5087.569 kb on + strand at 5087.569 kb on + strand at 5087.569 kb on + strand at 5087.570 kb on - strand at 5087.570 kb on - strand at 5087.570 kb on - strand at 5087.570 kb on - strand at 5087.570 kb on - strand at 5087.570 kb on - strand at 5087.598 kb on + strand at 5087.599 kb on - strand at 5087.599 kb on - strand at 5087.599 kb on - strand at 5087.668 kb on - strand, within PFLU_RS22595 at 5087.668 kb on - strand, within PFLU_RS22595 at 5087.718 kb on - strand, within PFLU_RS22595 at 5087.756 kb on - strand, within PFLU_RS22595 at 5087.756 kb on - strand, within PFLU_RS22595 at 5087.756 kb on - strand, within PFLU_RS22595 at 5087.770 kb on - strand, within PFLU_RS22595 at 5087.796 kb on + strand, within PFLU_RS22595 at 5087.797 kb on - strand, within PFLU_RS22595 at 5087.805 kb on - strand, within PFLU_RS22595 at 5087.805 kb on - strand, within PFLU_RS22595 at 5087.805 kb on - strand, within PFLU_RS22595 at 5087.805 kb on - strand, within PFLU_RS22595 at 5087.859 kb on - strand, within PFLU_RS22595 at 5087.859 kb on - strand, within PFLU_RS22595 at 5087.865 kb on - strand, within PFLU_RS22595 at 5087.892 kb on - strand, within PFLU_RS22595 at 5088.140 kb on + strand, within PFLU_RS22595 at 5088.431 kb on - strand, within PFLU_RS22595 at 5088.575 kb on - strand at 5088.617 kb on - strand at 5088.631 kb on - strand at 5088.636 kb on + strand at 5088.636 kb on + strand at 5088.636 kb on + strand at 5088.636 kb on + strand at 5088.637 kb on - strand at 5088.637 kb on - strand at 5088.637 kb on - strand at 5088.637 kb on - strand at 5088.637 kb on - strand at 5088.637 kb on - strand at 5088.643 kb on + strand at 5088.643 kb on + strand at 5088.643 kb on + strand at 5088.644 kb on - strand at 5088.644 kb on - strand at 5088.644 kb on - strand at 5088.644 kb on - strand at 5088.644 kb on - strand at 5088.657 kb on + strand at 5088.657 kb on + strand at 5088.657 kb on + strand at 5088.658 kb on - strand at 5088.658 kb on - strand at 5088.658 kb on - strand at 5088.690 kb on - strand at 5088.712 kb on - strand at 5088.822 kb on + strand, within PFLU_RS22600 at 5088.823 kb on - strand, within PFLU_RS22600 at 5088.823 kb on - strand, within PFLU_RS22600 at 5088.823 kb on - strand, within PFLU_RS22600 at 5088.967 kb on - strand, within PFLU_RS22600 at 5088.979 kb on - strand, within PFLU_RS22600 at 5088.979 kb on - strand, within PFLU_RS22600 at 5088.979 kb on - strand, within PFLU_RS22600 at 5089.027 kb on - strand, within PFLU_RS22600 at 5089.083 kb on - strand, within PFLU_RS22600 at 5089.083 kb on - strand, within PFLU_RS22600 at 5089.083 kb on - strand, within PFLU_RS22600 at 5089.087 kb on - strand, within PFLU_RS22600 at 5089.087 kb on - strand, within PFLU_RS22600 at 5089.120 kb on - strand, within PFLU_RS22600 at 5089.152 kb on - strand, within PFLU_RS22600 at 5089.216 kb on - strand at 5089.216 kb on - strand at 5089.216 kb on - strand at 5089.312 kb on + strand at 5089.312 kb on + strand at 5089.312 kb on + strand at 5089.313 kb on - strand at 5089.313 kb on - strand at 5089.313 kb on - strand at 5089.317 kb on + strand at 5089.317 kb on + strand at 5089.317 kb on + strand at 5089.317 kb on + strand at 5089.318 kb on - strand at 5089.342 kb on + strand at 5089.482 kb on + strand, within PFLU_RS22605 at 5089.482 kb on + strand, within PFLU_RS22605 at 5089.483 kb on - strand, within PFLU_RS22605 at 5089.483 kb on - strand, within PFLU_RS22605 at 5089.497 kb on + strand, within PFLU_RS22605 at 5089.497 kb on + strand, within PFLU_RS22605 at 5089.497 kb on + strand, within PFLU_RS22605 at 5089.497 kb on + strand, within PFLU_RS22605 at 5089.497 kb on + strand, within PFLU_RS22605 at 5089.497 kb on + strand, within PFLU_RS22605 at 5089.497 kb on + strand, within PFLU_RS22605 at 5089.497 kb on + strand, within PFLU_RS22605 at 5089.497 kb on + strand, within PFLU_RS22605 at 5089.497 kb on + strand, within PFLU_RS22605 at 5089.497 kb on + strand, within PFLU_RS22605 at 5089.497 kb on + strand, within PFLU_RS22605 at 5089.497 kb on + strand, within PFLU_RS22605 at 5089.497 kb on + strand, within PFLU_RS22605 at 5089.497 kb on + strand, within PFLU_RS22605 at 5089.498 kb on - strand, within PFLU_RS22605 at 5089.498 kb on - strand, within PFLU_RS22605 at 5089.498 kb on - strand, within PFLU_RS22605 at 5089.498 kb on - strand, within PFLU_RS22605 at 5089.498 kb on - strand, within PFLU_RS22605 at 5089.498 kb on - strand, within PFLU_RS22605 at 5089.498 kb on - strand, within PFLU_RS22605 at 5089.498 kb on - strand, within PFLU_RS22605
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) and Ammonium chloride (N); with MOPS remove 5,086,717 + +0.4 5,086,718 - +0.9 5,086,718 - +1.4 5,086,718 - +0.3 5,086,747 + -0.1 5,086,747 + -2.1 5,086,747 + +0.7 5,086,748 - +0.4 5,086,748 - -0.5 5,086,748 - -0.5 5,086,748 - +0.2 5,086,964 + PFLU_RS22590 0.27 -0.0 5,086,964 + PFLU_RS22590 0.27 -0.2 5,086,965 - PFLU_RS22590 0.27 +1.7 5,086,965 - PFLU_RS22590 0.27 -1.0 5,086,965 - PFLU_RS22590 0.27 +0.2 5,086,986 + PFLU_RS22590 0.30 -0.5 5,086,987 - PFLU_RS22590 0.30 +0.4 5,087,111 + PFLU_RS22590 0.47 -0.6 5,087,262 + PFLU_RS22590 0.67 +1.1 5,087,262 + PFLU_RS22590 0.67 +0.4 5,087,262 + PFLU_RS22590 0.67 -0.4 5,087,262 + PFLU_RS22590 0.67 +1.4 5,087,262 + PFLU_RS22590 0.67 -0.9 5,087,262 + PFLU_RS22590 0.67 -2.4 5,087,262 + PFLU_RS22590 0.67 +0.7 5,087,262 + PFLU_RS22590 0.67 +0.1 5,087,262 + PFLU_RS22590 0.67 -1.6 5,087,262 + PFLU_RS22590 0.67 -0.7 5,087,262 + PFLU_RS22590 0.67 -0.0 5,087,262 + PFLU_RS22590 0.67 +0.4 5,087,262 + PFLU_RS22590 0.67 +1.0 5,087,262 + PFLU_RS22590 0.67 +0.9 5,087,262 + PFLU_RS22590 0.67 -0.3 5,087,262 + PFLU_RS22590 0.67 -0.0 5,087,262 + PFLU_RS22590 0.67 +1.6 5,087,262 + PFLU_RS22590 0.67 -0.1 5,087,262 + PFLU_RS22590 0.67 +0.1 5,087,262 + PFLU_RS22590 0.67 -2.7 5,087,262 + PFLU_RS22590 0.67 +1.0 5,087,263 - PFLU_RS22590 0.67 +1.0 5,087,263 - PFLU_RS22590 0.67 +1.0 5,087,263 - PFLU_RS22590 0.67 -1.0 5,087,263 - PFLU_RS22590 0.67 -1.0 5,087,263 - PFLU_RS22590 0.67 +0.6 5,087,263 - PFLU_RS22590 0.67 -2.0 5,087,263 - PFLU_RS22590 0.67 -0.3 5,087,263 - PFLU_RS22590 0.67 -0.8 5,087,263 - PFLU_RS22590 0.67 +1.4 5,087,263 - PFLU_RS22590 0.67 +0.1 5,087,263 - PFLU_RS22590 0.67 -0.4 5,087,263 - PFLU_RS22590 0.67 +1.4 5,087,263 - PFLU_RS22590 0.67 +0.4 5,087,263 - PFLU_RS22590 0.67 -0.2 5,087,327 + PFLU_RS22590 0.76 +0.0 5,087,400 + PFLU_RS22590 0.85 +1.1 5,087,400 + PFLU_RS22590 0.85 -1.0 5,087,400 + PFLU_RS22590 0.85 +0.5 5,087,400 + PFLU_RS22590 0.85 +0.6 5,087,400 + PFLU_RS22590 0.85 +1.2 5,087,400 + PFLU_RS22590 0.85 +0.1 5,087,400 + PFLU_RS22590 0.85 +1.7 5,087,400 + PFLU_RS22590 0.85 +0.8 5,087,400 + PFLU_RS22590 0.85 +1.4 5,087,400 + PFLU_RS22590 0.85 +0.0 5,087,400 + PFLU_RS22590 0.85 -0.2 5,087,400 + PFLU_RS22590 0.85 +0.6 5,087,400 + PFLU_RS22590 0.85 -0.7 5,087,400 + PFLU_RS22590 0.85 -0.3 5,087,400 + PFLU_RS22590 0.85 -0.4 5,087,400 + PFLU_RS22590 0.85 +0.1 5,087,400 + PFLU_RS22590 0.85 +1.5 5,087,400 + PFLU_RS22590 0.85 -1.0 5,087,400 + PFLU_RS22590 0.85 -1.0 5,087,401 - PFLU_RS22590 0.86 +0.2 5,087,401 - PFLU_RS22590 0.86 +0.7 5,087,401 - PFLU_RS22590 0.86 +1.4 5,087,401 - PFLU_RS22590 0.86 -0.5 5,087,401 - PFLU_RS22590 0.86 -0.5 5,087,401 - PFLU_RS22590 0.86 -0.0 5,087,401 - PFLU_RS22590 0.86 +0.7 5,087,401 - PFLU_RS22590 0.86 +0.1 5,087,401 - PFLU_RS22590 0.86 +0.6 5,087,401 - PFLU_RS22590 0.86 +2.0 5,087,401 - PFLU_RS22590 0.86 +0.5 5,087,401 - PFLU_RS22590 0.86 -0.1 5,087,401 - PFLU_RS22590 0.86 -0.1 5,087,401 - PFLU_RS22590 0.86 +0.1 5,087,401 - PFLU_RS22590 0.86 +0.0 5,087,401 - PFLU_RS22590 0.86 -0.4 5,087,401 - PFLU_RS22590 0.86 -0.3 5,087,481 + +1.1 5,087,482 - -2.0 5,087,498 - +0.7 5,087,539 - -1.9 5,087,565 + -1.4 5,087,565 + +0.6 5,087,565 + +1.4 5,087,569 + -0.4 5,087,569 + +0.6 5,087,569 + +1.4 5,087,570 - +1.0 5,087,570 - +0.5 5,087,570 - +0.5 5,087,570 - +0.1 5,087,570 - -1.7 5,087,570 - +0.6 5,087,598 + -0.4 5,087,599 - -2.7 5,087,599 - -0.6 5,087,599 - -1.4 5,087,668 - PFLU_RS22595 0.10 -1.2 5,087,668 - PFLU_RS22595 0.10 +0.4 5,087,718 - PFLU_RS22595 0.15 -0.9 5,087,756 - PFLU_RS22595 0.19 -2.0 5,087,756 - PFLU_RS22595 0.19 +1.0 5,087,756 - PFLU_RS22595 0.19 -0.0 5,087,770 - PFLU_RS22595 0.21 -1.4 5,087,796 + PFLU_RS22595 0.23 -0.9 5,087,797 - PFLU_RS22595 0.23 -0.9 5,087,805 - PFLU_RS22595 0.24 -0.9 5,087,805 - PFLU_RS22595 0.24 -0.6 5,087,805 - PFLU_RS22595 0.24 -0.0 5,087,805 - PFLU_RS22595 0.24 -0.4 5,087,859 - PFLU_RS22595 0.30 -0.4 5,087,859 - PFLU_RS22595 0.30 -0.6 5,087,865 - PFLU_RS22595 0.30 -0.9 5,087,892 - PFLU_RS22595 0.33 -1.5 5,088,140 + PFLU_RS22595 0.58 -0.4 5,088,431 - PFLU_RS22595 0.88 -0.0 5,088,575 - -0.0 5,088,617 - -0.9 5,088,631 - -0.0 5,088,636 + -2.1 5,088,636 + -0.4 5,088,636 + -0.6 5,088,636 + -0.9 5,088,637 - +0.0 5,088,637 - -0.7 5,088,637 - +0.6 5,088,637 - -0.2 5,088,637 - -1.9 5,088,637 - -1.4 5,088,643 + -1.7 5,088,643 + +0.5 5,088,643 + -0.0 5,088,644 - -1.0 5,088,644 - -0.2 5,088,644 - -0.3 5,088,644 - -0.6 5,088,644 - -1.0 5,088,657 + -0.0 5,088,657 + -0.2 5,088,657 + -0.8 5,088,658 - -1.1 5,088,658 - -0.5 5,088,658 - +1.0 5,088,690 - -1.5 5,088,712 - -0.0 5,088,822 + PFLU_RS22600 0.28 -0.9 5,088,823 - PFLU_RS22600 0.28 -1.0 5,088,823 - PFLU_RS22600 0.28 +1.1 5,088,823 - PFLU_RS22600 0.28 +0.6 5,088,967 - PFLU_RS22600 0.53 -0.6 5,088,979 - PFLU_RS22600 0.55 +0.7 5,088,979 - PFLU_RS22600 0.55 -0.5 5,088,979 - PFLU_RS22600 0.55 -1.6 5,089,027 - PFLU_RS22600 0.63 -1.4 5,089,083 - PFLU_RS22600 0.72 +0.5 5,089,083 - PFLU_RS22600 0.72 +2.0 5,089,083 - PFLU_RS22600 0.72 -1.7 5,089,087 - PFLU_RS22600 0.73 +2.3 5,089,087 - PFLU_RS22600 0.73 -1.4 5,089,120 - PFLU_RS22600 0.79 +1.7 5,089,152 - PFLU_RS22600 0.84 -0.3 5,089,216 - +0.4 5,089,216 - +1.1 5,089,216 - +0.7 5,089,312 + -0.2 5,089,312 + -0.7 5,089,312 + +0.3 5,089,313 - +0.1 5,089,313 - +1.2 5,089,313 - -0.8 5,089,317 + +0.4 5,089,317 + +1.3 5,089,317 + +0.5 5,089,317 + -0.7 5,089,318 - -0.4 5,089,342 + -0.0 5,089,482 + PFLU_RS22605 0.18 +1.3 5,089,482 + PFLU_RS22605 0.18 +1.1 5,089,483 - PFLU_RS22605 0.18 -0.7 5,089,483 - PFLU_RS22605 0.18 -0.8 5,089,497 + PFLU_RS22605 0.20 -0.2 5,089,497 + PFLU_RS22605 0.20 +1.4 5,089,497 + PFLU_RS22605 0.20 -0.0 5,089,497 + PFLU_RS22605 0.20 +0.1 5,089,497 + PFLU_RS22605 0.20 +1.0 5,089,497 + PFLU_RS22605 0.20 -2.7 5,089,497 + PFLU_RS22605 0.20 -0.4 5,089,497 + PFLU_RS22605 0.20 +0.0 5,089,497 + PFLU_RS22605 0.20 -2.6 5,089,497 + PFLU_RS22605 0.20 -0.3 5,089,497 + PFLU_RS22605 0.20 +1.4 5,089,497 + PFLU_RS22605 0.20 -0.7 5,089,497 + PFLU_RS22605 0.20 +0.2 5,089,497 + PFLU_RS22605 0.20 -0.5 5,089,497 + PFLU_RS22605 0.20 +0.8 5,089,498 - PFLU_RS22605 0.20 -1.4 5,089,498 - PFLU_RS22605 0.20 -0.4 5,089,498 - PFLU_RS22605 0.20 -0.6 5,089,498 - PFLU_RS22605 0.20 -1.5 5,089,498 - PFLU_RS22605 0.20 -0.5 5,089,498 - PFLU_RS22605 0.20 -0.4 5,089,498 - PFLU_RS22605 0.20 -1.4 5,089,498 - PFLU_RS22605 0.20 -0.0
Or see this region's nucleotide sequence