Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x; and 2,2'-Dipyridyl 50 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23355 and BWI76_RS23360 are separated by 125 nucleotides BWI76_RS23360 and BWI76_RS23365 are separated by 135 nucleotides
BWI76_RS23355: BWI76_RS23355 - LacI family transcriptional regulator, at 4,870,203 to 4,871,213
_RS23355
BWI76_RS23360: BWI76_RS23360 - diaminopimelate decarboxylase, at 4,871,339 to 4,872,601
_RS23360
BWI76_RS23365: BWI76_RS23365 - LysR family transcriptional regulator, at 4,872,737 to 4,873,663
_RS23365
Position (kb)
4871
4872
4873 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4870.513 kb on + strand, within BWI76_RS23355 at 4870.532 kb on - strand, within BWI76_RS23355 at 4870.705 kb on - strand, within BWI76_RS23355 at 4870.730 kb on - strand, within BWI76_RS23355 at 4870.884 kb on - strand, within BWI76_RS23355 at 4871.337 kb on + strand at 4871.385 kb on - strand at 4872.158 kb on + strand, within BWI76_RS23360 at 4872.261 kb on + strand, within BWI76_RS23360 at 4872.261 kb on + strand, within BWI76_RS23360 at 4872.295 kb on + strand, within BWI76_RS23360 at 4872.507 kb on + strand at 4873.349 kb on - strand, within BWI76_RS23365 at 4873.500 kb on + strand at 4873.500 kb on + strand, within BWI76_RS23365 at 4873.508 kb on - strand, within BWI76_RS23365 at 4873.534 kb on - strand, within BWI76_RS23365
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x; and 2,2'-Dipyridyl 50 uM remove 4,870,513 + BWI76_RS23355 0.31 +0.4 4,870,532 - BWI76_RS23355 0.33 +0.8 4,870,705 - BWI76_RS23355 0.50 -0.0 4,870,730 - BWI76_RS23355 0.52 +0.2 4,870,884 - BWI76_RS23355 0.67 +0.5 4,871,337 + +0.2 4,871,385 - -3.4 4,872,158 + BWI76_RS23360 0.65 -1.4 4,872,261 + BWI76_RS23360 0.73 -2.1 4,872,261 + BWI76_RS23360 0.73 -2.0 4,872,295 + BWI76_RS23360 0.76 -2.3 4,872,507 + -1.2 4,873,349 - BWI76_RS23365 0.66 -1.2 4,873,500 + +0.3 4,873,500 + BWI76_RS23365 0.82 -1.7 4,873,508 - BWI76_RS23365 0.83 -1.2 4,873,534 - BWI76_RS23365 0.86 -2.0
Or see this region's nucleotide sequence