Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x; and 2,2'-Dipyridyl 50 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17990 and BWI76_RS17995 overlap by 32 nucleotides BWI76_RS17995 and BWI76_RS18000 are separated by 36 nucleotides
BWI76_RS17990: BWI76_RS17990 - paraquat-inducible membrane protein A, at 3,737,520 to 3,738,803
_RS17990
BWI76_RS17995: BWI76_RS17995 - hypothetical protein, at 3,738,772 to 3,741,405
_RS17995
BWI76_RS18000: BWI76_RS18000 - 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF, at 3,741,442 to 3,742,917
_RS18000
Position (kb)
3738
3739
3740
3741
3742 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3737.834 kb on - strand, within BWI76_RS17990 at 3737.858 kb on - strand, within BWI76_RS17990 at 3737.986 kb on - strand, within BWI76_RS17990 at 3738.077 kb on + strand, within BWI76_RS17990 at 3738.167 kb on + strand, within BWI76_RS17990 at 3738.563 kb on - strand, within BWI76_RS17990 at 3739.085 kb on - strand, within BWI76_RS17995 at 3739.193 kb on - strand, within BWI76_RS17995 at 3739.349 kb on + strand, within BWI76_RS17995 at 3739.357 kb on - strand, within BWI76_RS17995 at 3739.482 kb on + strand, within BWI76_RS17995 at 3739.666 kb on - strand, within BWI76_RS17995 at 3739.858 kb on + strand, within BWI76_RS17995 at 3739.867 kb on - strand, within BWI76_RS17995 at 3739.867 kb on - strand, within BWI76_RS17995 at 3740.264 kb on + strand, within BWI76_RS17995 at 3740.340 kb on - strand, within BWI76_RS17995 at 3740.719 kb on + strand, within BWI76_RS17995 at 3740.760 kb on - strand, within BWI76_RS17995 at 3740.816 kb on + strand at 3740.954 kb on - strand, within BWI76_RS17995 at 3741.265 kb on - strand at 3741.700 kb on - strand, within BWI76_RS18000 at 3742.331 kb on - strand, within BWI76_RS18000 at 3742.387 kb on + strand, within BWI76_RS18000
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x; and 2,2'-Dipyridyl 50 uM remove 3,737,834 - BWI76_RS17990 0.24 -1.4 3,737,858 - BWI76_RS17990 0.26 -0.5 3,737,986 - BWI76_RS17990 0.36 -0.2 3,738,077 + BWI76_RS17990 0.43 -0.1 3,738,167 + BWI76_RS17990 0.50 -0.8 3,738,563 - BWI76_RS17990 0.81 -1.3 3,739,085 - BWI76_RS17995 0.12 -0.2 3,739,193 - BWI76_RS17995 0.16 -2.6 3,739,349 + BWI76_RS17995 0.22 -1.0 3,739,357 - BWI76_RS17995 0.22 -1.2 3,739,482 + BWI76_RS17995 0.27 +0.2 3,739,666 - BWI76_RS17995 0.34 -2.8 3,739,858 + BWI76_RS17995 0.41 -1.2 3,739,867 - BWI76_RS17995 0.42 -1.0 3,739,867 - BWI76_RS17995 0.42 -0.4 3,740,264 + BWI76_RS17995 0.57 -1.5 3,740,340 - BWI76_RS17995 0.60 -0.5 3,740,719 + BWI76_RS17995 0.74 -0.6 3,740,760 - BWI76_RS17995 0.75 -0.8 3,740,816 + +0.1 3,740,954 - BWI76_RS17995 0.83 -0.9 3,741,265 - +1.4 3,741,700 - BWI76_RS18000 0.17 -0.5 3,742,331 - BWI76_RS18000 0.60 +0.2 3,742,387 + BWI76_RS18000 0.64 +1.4
Or see this region's nucleotide sequence