Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x; and 2,2'-Dipyridyl 50 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17075 and BWI76_RS17080 are separated by 117 nucleotides BWI76_RS17080 and BWI76_RS17085 are separated by 34 nucleotides
BWI76_RS17075: BWI76_RS17075 - 3-deoxy-7-phosphoheptulonate synthase, at 3,543,769 to 3,544,815
_RS17075
BWI76_RS17080: BWI76_RS17080 - hypothetical protein, at 3,544,933 to 3,545,160
_RS17080
BWI76_RS17085: BWI76_RS17085 - hypothetical protein, at 3,545,195 to 3,546,637
_RS17085
Position (kb)
3544
3545
3546 Strain fitness (log2 ratio)
-1
0
1
2 at 3544.161 kb on + strand, within BWI76_RS17075 at 3544.279 kb on - strand, within BWI76_RS17075 at 3544.310 kb on - strand, within BWI76_RS17075 at 3544.444 kb on - strand, within BWI76_RS17075 at 3545.073 kb on - strand, within BWI76_RS17080 at 3545.109 kb on + strand, within BWI76_RS17080 at 3545.112 kb on - strand, within BWI76_RS17080 at 3545.117 kb on - strand, within BWI76_RS17080 at 3545.121 kb on + strand, within BWI76_RS17080 at 3545.122 kb on - strand, within BWI76_RS17080 at 3545.140 kb on + strand at 3545.180 kb on - strand at 3545.385 kb on - strand, within BWI76_RS17085 at 3545.420 kb on - strand, within BWI76_RS17085 at 3545.599 kb on - strand, within BWI76_RS17085 at 3546.020 kb on - strand, within BWI76_RS17085 at 3546.160 kb on + strand, within BWI76_RS17085
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x; and 2,2'-Dipyridyl 50 uM remove 3,544,161 + BWI76_RS17075 0.37 -0.1 3,544,279 - BWI76_RS17075 0.49 +1.0 3,544,310 - BWI76_RS17075 0.52 +0.4 3,544,444 - BWI76_RS17075 0.64 +0.3 3,545,073 - BWI76_RS17080 0.61 +1.2 3,545,109 + BWI76_RS17080 0.77 +1.1 3,545,112 - BWI76_RS17080 0.79 +0.4 3,545,117 - BWI76_RS17080 0.81 +1.8 3,545,121 + BWI76_RS17080 0.82 +1.7 3,545,122 - BWI76_RS17080 0.83 +1.3 3,545,140 + +1.7 3,545,180 - +1.2 3,545,385 - BWI76_RS17085 0.13 +0.8 3,545,420 - BWI76_RS17085 0.16 +0.3 3,545,599 - BWI76_RS17085 0.28 +0.1 3,546,020 - BWI76_RS17085 0.57 -0.1 3,546,160 + BWI76_RS17085 0.67 +0.3
Or see this region's nucleotide sequence