Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x; and 2,2'-Dipyridyl 50 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04255 and BWI76_RS04260 are separated by 51 nucleotides BWI76_RS04260 and BWI76_RS04265 are separated by 77 nucleotides
BWI76_RS04255: BWI76_RS04255 - threonine synthase, at 875,922 to 877,202
_RS04255
BWI76_RS04260: BWI76_RS04260 - peroxide stress protein YaaA, at 877,254 to 878,027
_RS04260
BWI76_RS04265: BWI76_RS04265 - sodium:alanine symporter family protein, at 878,105 to 879,535
_RS04265
Position (kb) 877
878
879 Strain fitness (log2 ratio) -2
-1
0
1 at 876.398 kb on + strand, within BWI76_RS04255 at 876.428 kb on + strand, within BWI76_RS04255 at 876.620 kb on + strand, within BWI76_RS04255 at 876.620 kb on + strand, within BWI76_RS04255 at 876.644 kb on + strand, within BWI76_RS04255 at 876.644 kb on + strand, within BWI76_RS04255 at 876.812 kb on + strand, within BWI76_RS04255 at 876.812 kb on + strand, within BWI76_RS04255 at 876.820 kb on - strand, within BWI76_RS04255 at 876.820 kb on - strand, within BWI76_RS04255 at 877.744 kb on + strand, within BWI76_RS04260 at 877.854 kb on - strand, within BWI76_RS04260 at 877.928 kb on + strand, within BWI76_RS04260 at 878.022 kb on + strand at 878.031 kb on - strand at 878.228 kb on + strand at 878.354 kb on - strand, within BWI76_RS04265 at 878.354 kb on - strand, within BWI76_RS04265 at 878.354 kb on - strand, within BWI76_RS04265 at 878.364 kb on - strand, within BWI76_RS04265 at 878.587 kb on + strand, within BWI76_RS04265 at 878.649 kb on - strand, within BWI76_RS04265 at 878.669 kb on - strand, within BWI76_RS04265 at 878.876 kb on - strand, within BWI76_RS04265 at 878.897 kb on - strand, within BWI76_RS04265 at 878.977 kb on - strand, within BWI76_RS04265
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x; and 2,2'-Dipyridyl 50 uM remove 876,398 + BWI76_RS04255 0.37 +0.4 876,428 + BWI76_RS04255 0.40 -1.2 876,620 + BWI76_RS04255 0.54 -2.2 876,620 + BWI76_RS04255 0.54 -2.1 876,644 + BWI76_RS04255 0.56 -1.5 876,644 + BWI76_RS04255 0.56 -0.3 876,812 + BWI76_RS04255 0.69 -1.8 876,812 + BWI76_RS04255 0.69 -2.4 876,820 - BWI76_RS04255 0.70 -0.4 876,820 - BWI76_RS04255 0.70 -1.7 877,744 + BWI76_RS04260 0.63 -1.0 877,854 - BWI76_RS04260 0.78 -0.3 877,928 + BWI76_RS04260 0.87 -0.8 878,022 + -0.4 878,031 - -0.1 878,228 + +0.6 878,354 - BWI76_RS04265 0.17 -0.3 878,354 - BWI76_RS04265 0.17 -0.2 878,354 - BWI76_RS04265 0.17 -1.4 878,364 - BWI76_RS04265 0.18 -0.1 878,587 + BWI76_RS04265 0.34 -0.0 878,649 - BWI76_RS04265 0.38 +0.2 878,669 - BWI76_RS04265 0.39 -0.3 878,876 - BWI76_RS04265 0.54 +1.2 878,897 - BWI76_RS04265 0.55 +0.1 878,977 - BWI76_RS04265 0.61 -0.6
Or see this region's nucleotide sequence