Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x; and Iron (II) 0.209 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23355 and BWI76_RS23360 are separated by 125 nucleotides BWI76_RS23360 and BWI76_RS23365 are separated by 135 nucleotides
BWI76_RS23355: BWI76_RS23355 - LacI family transcriptional regulator, at 4,870,203 to 4,871,213
_RS23355
BWI76_RS23360: BWI76_RS23360 - diaminopimelate decarboxylase, at 4,871,339 to 4,872,601
_RS23360
BWI76_RS23365: BWI76_RS23365 - LysR family transcriptional regulator, at 4,872,737 to 4,873,663
_RS23365
Position (kb)
4871
4872
4873 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4870.513 kb on + strand, within BWI76_RS23355 at 4870.532 kb on - strand, within BWI76_RS23355 at 4870.705 kb on - strand, within BWI76_RS23355 at 4870.730 kb on - strand, within BWI76_RS23355 at 4870.884 kb on - strand, within BWI76_RS23355 at 4871.337 kb on + strand at 4871.385 kb on - strand at 4872.158 kb on + strand, within BWI76_RS23360 at 4872.261 kb on + strand, within BWI76_RS23360 at 4872.261 kb on + strand, within BWI76_RS23360 at 4872.295 kb on + strand, within BWI76_RS23360 at 4872.507 kb on + strand at 4873.349 kb on - strand, within BWI76_RS23365 at 4873.500 kb on + strand at 4873.500 kb on + strand, within BWI76_RS23365 at 4873.508 kb on - strand, within BWI76_RS23365 at 4873.534 kb on - strand, within BWI76_RS23365
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x; and Iron (II) 0.209 mg/mL remove 4,870,513 + BWI76_RS23355 0.31 +0.0 4,870,532 - BWI76_RS23355 0.33 +1.0 4,870,705 - BWI76_RS23355 0.50 -0.5 4,870,730 - BWI76_RS23355 0.52 -0.0 4,870,884 - BWI76_RS23355 0.67 +0.5 4,871,337 + +0.0 4,871,385 - -3.4 4,872,158 + BWI76_RS23360 0.65 -2.4 4,872,261 + BWI76_RS23360 0.73 -3.3 4,872,261 + BWI76_RS23360 0.73 -1.0 4,872,295 + BWI76_RS23360 0.76 -2.3 4,872,507 + -2.8 4,873,349 - BWI76_RS23365 0.66 -1.2 4,873,500 + -0.7 4,873,500 + BWI76_RS23365 0.82 -2.1 4,873,508 - BWI76_RS23365 0.83 -2.2 4,873,534 - BWI76_RS23365 0.86 -2.0
Or see this region's nucleotide sequence