Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09420

Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x; and Iron (II) 0.209 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09415 and BWI76_RS09420 overlap by 38 nucleotidesBWI76_RS09420 and BWI76_RS09425 are separated by 264 nucleotides BWI76_RS09415: BWI76_RS09415 - IS3 family transposase, at 1,973,266 to 1,974,377 _RS09415 BWI76_RS09420: BWI76_RS09420 - hypothetical protein, at 1,974,340 to 1,974,579 _RS09420 BWI76_RS09425: BWI76_RS09425 - transporter, at 1,974,844 to 1,976,529 _RS09425 Position (kb) 1974 1975Strain fitness (log2 ratio) -1 0 1at 1974.411 kb on - strand, within BWI76_RS09420at 1974.785 kb on + strandat 1974.785 kb on + strandat 1974.793 kb on - strandat 1974.857 kb on + strandat 1974.923 kb on + strandat 1975.074 kb on + strand, within BWI76_RS09425at 1975.300 kb on - strand, within BWI76_RS09425at 1975.433 kb on + strand, within BWI76_RS09425at 1975.433 kb on - strand, within BWI76_RS09425at 1975.454 kb on + strand, within BWI76_RS09425at 1975.462 kb on - strand, within BWI76_RS09425at 1975.467 kb on + strand, within BWI76_RS09425

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x; and Iron (II) 0.209 mg/mL
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1,974,411 - BWI76_RS09420 0.30 -1.1
1,974,785 + -0.4
1,974,785 + -0.5
1,974,793 - -0.1
1,974,857 + +0.5
1,974,923 + -0.2
1,975,074 + BWI76_RS09425 0.14 -0.4
1,975,300 - BWI76_RS09425 0.27 +0.2
1,975,433 + BWI76_RS09425 0.35 -1.7
1,975,433 - BWI76_RS09425 0.35 -0.5
1,975,454 + BWI76_RS09425 0.36 -0.5
1,975,462 - BWI76_RS09425 0.37 -0.3
1,975,467 + BWI76_RS09425 0.37 -0.1

Or see this region's nucleotide sequence