Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002457

Experiment: RCH2_defined_glucose_5mM with Chlorogenic 2 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose_5mM with Chlorogenic 2 mM
2,759,140	+		ABIE53_002456	0.46	+0.1
2,759,140	+		ABIE53_002456	0.46	+1.7
2,759,141	-		ABIE53_002456	0.46	+0.7
2,759,198	+		ABIE53_002456	0.50	+1.7
2,759,198	+		ABIE53_002456	0.50	+0.3
2,759,478	+		ABIE53_002456	0.68	+1.9
2,759,478	+		ABIE53_002456	0.68	-0.5
2,759,478	+		ABIE53_002456	0.68	-0.5
2,759,478	+		ABIE53_002456	0.68	+0.8
2,759,478	+		ABIE53_002456	0.68	+0.9
2,759,479	-		ABIE53_002456	0.68	+1.4
2,759,479	-		ABIE53_002456	0.68	+0.9
2,759,479	-		ABIE53_002456	0.68	+1.7
2,759,479	-		ABIE53_002456	0.68	+0.5
2,759,479	-		ABIE53_002456	0.68	+1.2
2,759,479	-		ABIE53_002456	0.68	-0.5
2,759,479	-		ABIE53_002456	0.68	+0.9
2,759,546	-		ABIE53_002456	0.72	+1.3
2,759,549	+		ABIE53_002456	0.72	-0.7
2,759,579	+		ABIE53_002456	0.74	+1.4
2,759,579	+		ABIE53_002456	0.74	+1.0
2,759,579	+		ABIE53_002456	0.74	+0.3
2,759,579	+		ABIE53_002456	0.74	+1.7
2,759,580	-		ABIE53_002456	0.74	+1.2
2,759,580	-		ABIE53_002456	0.74	+0.9
2,759,613	+		ABIE53_002456	0.76	-2.4
2,759,613	+		ABIE53_002456	0.76	+0.9
2,759,613	+		ABIE53_002456	0.76	-1.2
2,759,613	+		ABIE53_002456	0.76	-0.1
2,759,614	-		ABIE53_002456	0.76	+0.7
2,759,614	-		ABIE53_002456	0.76	-0.8
2,759,696	+		ABIE53_002456	0.82	+1.7
2,759,696	+		ABIE53_002456	0.82	+1.3
2,759,697	-		ABIE53_002456	0.82	+1.3
2,759,717	+		ABIE53_002456	0.83	+1.8
2,759,717	+		ABIE53_002456	0.83	+1.1
2,759,717	+		ABIE53_002456	0.83	+0.1
2,759,717	+		ABIE53_002456	0.83	+3.0
2,759,718	-		ABIE53_002456	0.83	-1.2
2,759,718	-		ABIE53_002456	0.83	+1.8
2,759,981	+				-2.2
2,759,981	+				-0.2
2,759,981	+				+0.7
2,759,982	-				+0.7
2,759,982	-				+1.4
2,759,982	-				+1.0
2,759,982	-				+1.2
2,759,982	-				-0.2
2,759,982	-				+0.5
2,760,037	-				+0.0
2,760,037	-				+0.5
2,760,049	+				+0.3
2,760,208	-		ABIE53_002457	0.11	-0.9
2,760,216	+		ABIE53_002457	0.11	+0.7
2,760,216	+		ABIE53_002457	0.11	+1.0
2,760,216	+		ABIE53_002457	0.11	-0.6
2,760,216	+		ABIE53_002457	0.11	-0.2
2,760,216	+		ABIE53_002457	0.11	+0.7
2,760,217	-		ABIE53_002457	0.11	+0.7
2,760,217	-		ABIE53_002457	0.11	+0.5
2,760,217	-		ABIE53_002457	0.11	+2.3
2,760,217	-		ABIE53_002457	0.11	+1.4
2,760,219	+		ABIE53_002457	0.12	-0.9
2,760,219	+		ABIE53_002457	0.12	+1.7
2,760,219	+		ABIE53_002457	0.12	+0.3
2,760,219	+		ABIE53_002457	0.12	+1.2
2,760,219	+		ABIE53_002457	0.12	+0.2
2,760,219	+		ABIE53_002457	0.12	+0.2
2,760,219	+		ABIE53_002457	0.12	+0.8
2,760,219	+		ABIE53_002457	0.12	+2.7
2,760,219	+		ABIE53_002457	0.12	-0.3
2,760,219	+		ABIE53_002457	0.12	+0.7
2,760,220	-		ABIE53_002457	0.12	+1.1
2,760,220	-		ABIE53_002457	0.12	+1.2
2,760,220	-		ABIE53_002457	0.12	+1.8
2,760,220	-		ABIE53_002457	0.12	-0.3
2,760,220	-		ABIE53_002457	0.12	+1.0
2,760,220	-		ABIE53_002457	0.12	+1.1
2,760,220	-		ABIE53_002457	0.12	+0.5
2,760,262	-		ABIE53_002457	0.15	+1.4
2,760,262	-		ABIE53_002457	0.15	+1.1
2,760,262	-		ABIE53_002457	0.15	+0.0
2,760,468	+		ABIE53_002457	0.31	+0.1
2,760,469	-		ABIE53_002457	0.31	+4.2
2,760,723	+		ABIE53_002457	0.52	+1.2
2,760,723	+		ABIE53_002457	0.52	+0.7
2,760,723	+		ABIE53_002457	0.52	-0.8
2,760,930	+		ABIE53_002457	0.68	+2.0
2,760,930	+		ABIE53_002457	0.68	+0.9
2,760,930	+		ABIE53_002457	0.68	+1.5
2,760,931	-		ABIE53_002457	0.68	+0.5
2,760,931	-		ABIE53_002457	0.68	-1.7
2,760,931	-		ABIE53_002457	0.68	+1.7
2,760,931	-		ABIE53_002457	0.68	+0.4
2,760,931	-		ABIE53_002457	0.68	-0.6
2,760,931	-		ABIE53_002457	0.68	+2.2
2,760,948	+		ABIE53_002457	0.69	-0.3
2,760,948	+		ABIE53_002457	0.69	-0.1
2,760,948	+		ABIE53_002457	0.69	-0.3
2,760,949	-		ABIE53_002457	0.69	+1.1
2,760,949	-		ABIE53_002457	0.69	+1.4
2,761,061	+		ABIE53_002457	0.78	-0.9
2,761,207	-		ABIE53_002457	0.90	-1.6
2,761,207	-		ABIE53_002457	0.90	-1.1
2,761,332	+				-0.4
2,761,332	+				-0.1
2,761,332	+				-0.1
2,761,332	+				+0.7
2,761,333	-				+1.7
2,761,333	-				-0.1
2,761,333	-				-0.3
2,761,333	-				+0.2
2,761,333	-				-0.0
2,761,333	-				-0.4
2,761,333	-				-0.7
2,761,351	+				+0.3
2,761,351	+				-0.5
2,761,351	+				+1.0
2,761,351	+				+2.7
2,761,352	-				+1.1
2,761,352	-				+0.1
2,761,352	-				-1.0
2,761,352	-				+0.5
2,761,352	-				+0.9
2,761,352	-				+1.7
2,761,352	-				+1.1
2,761,774	+		ABIE53_002458	0.26	-0.9
2,761,775	-		ABIE53_002458	0.26	-0.7
2,761,775	-		ABIE53_002458	0.26	-0.5
2,761,775	-		ABIE53_002458	0.26	+1.7
2,761,898	-		ABIE53_002458	0.34	-0.7
2,761,898	-		ABIE53_002458	0.34	-1.4
2,762,233	+		ABIE53_002458	0.55	+0.1
2,762,233	+		ABIE53_002458	0.55	+1.1
2,762,234	-		ABIE53_002458	0.56	+0.1
2,762,234	-		ABIE53_002458	0.56	+2.2
2,762,234	-		ABIE53_002458	0.56	-0.9
2,762,234	-		ABIE53_002458	0.56	-2.0
2,762,234	-		ABIE53_002458	0.56	+0.1
2,762,252	+		ABIE53_002458	0.57	+0.5
2,762,253	-		ABIE53_002458	0.57	-1.5