Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3251

Experiment: Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml
4,149,700	+		BT3249	0.76	+0.4
4,149,700	+		BT3249	0.76	-1.8
4,149,701	-		BT3249	0.76	-0.1
4,149,701	-		BT3249	0.76	-2.8
4,149,924	+				-0.9
4,149,929	+				-0.8
4,149,930	-				+0.9
4,149,930	-				-0.1
4,149,971	+				+0.0
4,149,972	-				+1.0
4,149,972	-				-0.1
4,150,066	-		BT3250	0.20	+1.0
4,150,066	-		BT3250	0.20	+0.4
4,150,066	-		BT3250	0.20	+1.7
4,150,066	-				+1.7
4,150,095	-		BT3250	0.24	+1.7
4,150,102	-		BT3250	0.25	+0.4
4,150,168	-		BT3250	0.34	+0.1
4,150,254	-		BT3250	0.46	-3.7
4,150,280	-		BT3250	0.49	-0.6
4,150,286	+		BT3250	0.50	-1.1
4,150,309	+		BT3250	0.53	-1.2
4,150,350	-		BT3250	0.59	-0.5
4,150,350	-		BT3250	0.59	+0.5
4,150,350	-		BT3250	0.59	-0.9
4,150,350	-		BT3250	0.59	+0.4
4,150,351	+		BT3250	0.59	-0.6
4,150,353	+		BT3250	0.59	-0.5
4,150,406	-		BT3250	0.67	+0.2
4,150,406	-		BT3250	0.67	-1.0
4,150,408	-		BT3250	0.67	+0.1
4,150,412	+		BT3250	0.68	-1.8
4,150,413	-		BT3250	0.68	+0.9
4,150,413	-		BT3250	0.68	-1.2
4,150,418	-		BT3250	0.68	-0.9
4,150,418	-		BT3250	0.68	-1.1
4,150,418	-		BT3250	0.68	-1.3
4,150,418	-		BT3250	0.68	-1.4
4,150,448	-		BT3250	0.73	-0.1
4,150,537	+		BT3250	0.85	-1.9
4,150,538	-		BT3250	0.85	-0.3
4,150,665	-				+2.4
4,150,665	-				+0.1
4,150,667	+				-1.1
4,150,675	-				+0.1
4,150,679	-				-0.1
4,150,689	-				+0.1
4,150,725	+				+0.5
4,150,725	+				-1.1
4,150,730	-				+1.4
4,150,730	-				+1.6
4,150,744	+		BT3251	0.11	+0.7
4,150,744	+		BT3251	0.11	-1.1
4,150,745	-		BT3251	0.11	+1.4
4,150,745	-		BT3251	0.11	+1.0
4,150,750	-		BT3251	0.12	+2.3
4,150,791	-		BT3251	0.21	+1.8
4,150,791	-		BT3251	0.21	+1.1
4,150,794	-		BT3251	0.21	+1.9
4,150,966	+		BT3251	0.57	-1.1
4,150,967	-		BT3251	0.57	+0.7
4,150,967	-		BT3251	0.57	+0.1
4,150,967	-		BT3251	0.57	-0.1
4,150,967	-		BT3251	0.57	+1.7
4,150,967	-		BT3251	0.57	+1.4
4,150,970	-		BT3251	0.58	+1.5
4,150,970	-		BT3251	0.58	+0.5
4,151,016	-		BT3251	0.68	+0.7
4,151,053	-				-1.1
4,151,084	+		BT3251	0.82	+0.7
4,151,085	-		BT3251	0.82	+1.3
4,151,098	-		BT3251	0.85	-0.5
4,151,146	-				+1.3
4,152,170	-				-2.4