Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1360

Experiment: Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml
1,686,470	-		BT1359	0.42	-0.8
1,686,518	-		BT1359	0.45	+0.5
1,686,518	-		BT1359	0.45	-0.8
1,686,518	-		BT1359	0.45	-0.4
1,686,537	-		BT1359	0.46	-0.9
1,686,592	-		BT1359	0.49	-1.3
1,686,633	+		BT1359	0.52	+1.3
1,686,640	+		BT1359	0.52	-0.4
1,686,641	-		BT1359	0.52	+1.2
1,686,658	+		BT1359	0.53	-0.1
1,686,659	-		BT1359	0.53	-1.1
1,686,659	-		BT1359	0.53	+0.1
1,686,752	-		BT1359	0.59	-0.7
1,686,918	-		BT1359	0.68	+1.5
1,686,990	-		BT1359	0.73	+0.5
1,686,991	+		BT1359	0.73	-1.5
1,686,991	+		BT1359	0.73	+0.2
1,686,992	-		BT1359	0.73	-0.3
1,686,995	-		BT1359	0.73	-1.1
1,686,995	-		BT1359	0.73	+1.5
1,687,001	-		BT1359	0.73	-0.8
1,687,064	+		BT1359	0.77	-1.3
1,687,070	-		BT1359	0.77	+0.8
1,687,348	-				+0.1
1,687,443	+				-0.9
1,687,457	+				-0.5
1,688,238	-				-0.9
1,688,386	-				+1.7
1,688,386	-				-2.1
1,688,388	-				-2.3
1,688,389	+				-0.0
1,688,501	-		BT1361	0.16	-1.1
1,688,627	-		BT1361	0.23	-1.4
1,688,690	-		BT1361	0.27	-0.7
1,688,889	-		BT1361	0.39	-2.5
1,688,889	-		BT1361	0.39	-0.3
1,688,889	-		BT1361	0.39	-1.0
1,688,889	-		BT1361	0.39	-1.1