Experiment: Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0792 and BT0793 are separated by 12 nucleotides BT0793 and BT0794 are separated by 102 nucleotides
BT0792: BT0792 - xylulokinase (EC 2.7.1.17) <small>(from data)</small>, at 981,492 to 982,985
BT0792
BT0793: BT0793 - xylose isomerase (NCBI ptt file), at 982,998 to 984,314
BT0793
BT0794: BT0794 - D-xylose-proton symporter (D-xylose transporter) (NCBI ptt file), at 984,417 to 985,871
BT0794
Position (kb) 982
983
984
985 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 982.271 kb on + strand, within BT0792 at 982.272 kb on - strand, within BT0792 at 982.297 kb on - strand, within BT0792 at 982.458 kb on - strand, within BT0792 at 982.514 kb on + strand, within BT0792 at 982.623 kb on - strand, within BT0792 at 982.728 kb on - strand, within BT0792 at 982.849 kb on - strand at 982.884 kb on - strand at 982.910 kb on - strand at 982.955 kb on + strand at 982.961 kb on - strand at 983.082 kb on + strand at 983.293 kb on - strand, within BT0793 at 983.338 kb on + strand, within BT0793 at 983.372 kb on - strand, within BT0793 at 983.377 kb on - strand, within BT0793 at 983.452 kb on - strand, within BT0793 at 983.586 kb on - strand, within BT0793 at 983.863 kb on + strand, within BT0793 at 983.966 kb on + strand, within BT0793 at 984.035 kb on + strand, within BT0793 at 984.056 kb on + strand, within BT0793 at 984.139 kb on - strand, within BT0793 at 984.141 kb on - strand, within BT0793 at 984.306 kb on + strand at 984.307 kb on - strand at 984.307 kb on - strand at 984.313 kb on - strand at 984.317 kb on - strand at 984.423 kb on - strand at 984.464 kb on + strand at 984.465 kb on - strand at 984.575 kb on + strand, within BT0794 at 984.597 kb on - strand, within BT0794 at 984.675 kb on - strand, within BT0794 at 984.915 kb on - strand, within BT0794 at 985.056 kb on + strand, within BT0794 at 985.057 kb on - strand, within BT0794 at 985.259 kb on + strand, within BT0794 at 985.259 kb on + strand, within BT0794 at 985.264 kb on - strand, within BT0794 at 985.270 kb on + strand, within BT0794
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml remove 982,271 + BT0792 0.52 +0.4 982,272 - BT0792 0.52 +0.8 982,297 - BT0792 0.54 +0.2 982,458 - BT0792 0.65 -1.0 982,514 + BT0792 0.68 -0.9 982,623 - BT0792 0.76 -1.6 982,728 - BT0792 0.83 -1.3 982,849 - -1.4 982,884 - +1.0 982,910 - -1.2 982,955 + -1.0 982,961 - +0.1 983,082 + -1.3 983,293 - BT0793 0.22 -0.4 983,338 + BT0793 0.26 -1.8 983,372 - BT0793 0.28 -0.4 983,377 - BT0793 0.29 -1.5 983,452 - BT0793 0.34 -2.5 983,586 - BT0793 0.45 -0.2 983,863 + BT0793 0.66 -0.4 983,966 + BT0793 0.74 -1.9 984,035 + BT0793 0.79 -1.4 984,056 + BT0793 0.80 -0.8 984,139 - BT0793 0.87 -2.4 984,141 - BT0793 0.87 +1.6 984,306 + +0.6 984,307 - -1.3 984,307 - -0.1 984,313 - -1.8 984,317 - +0.2 984,423 - +0.1 984,464 + +0.3 984,465 - -1.0 984,575 + BT0794 0.11 -3.3 984,597 - BT0794 0.12 -1.0 984,675 - BT0794 0.18 -0.3 984,915 - BT0794 0.34 +0.2 985,056 + BT0794 0.44 +1.1 985,057 - BT0794 0.44 +1.2 985,259 + BT0794 0.58 -1.0 985,259 + BT0794 0.58 +0.3 985,264 - BT0794 0.58 -0.2 985,270 + BT0794 0.59 +1.1
Or see this region's nucleotide sequence