Experiment: Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0664 and BT0665 are separated by 8 nucleotides BT0665 and BT0666 overlap by 1 nucleotides
BT0664: BT0664 - hypothetical protein (NCBI ptt file), at 818,740 to 819,888
BT0664
BT0665: BT0665 - hypothetical protein (NCBI ptt file), at 819,897 to 820,535
BT0665
BT0666: BT0666 - hypothetical protein (NCBI ptt file), at 820,535 to 821,680
BT0666
Position (kb) 819
820
821 Strain fitness (log2 ratio) -2
-1
0
1
2 at 818.937 kb on - strand, within BT0664 at 819.061 kb on - strand, within BT0664 at 819.259 kb on - strand, within BT0664 at 819.309 kb on - strand, within BT0664 at 819.350 kb on - strand, within BT0664 at 819.429 kb on - strand, within BT0664 at 819.437 kb on - strand, within BT0664 at 819.474 kb on - strand, within BT0664 at 819.523 kb on - strand, within BT0664 at 819.545 kb on + strand, within BT0664 at 819.622 kb on + strand, within BT0664 at 819.689 kb on - strand, within BT0664 at 819.713 kb on - strand, within BT0664 at 819.742 kb on + strand, within BT0664 at 819.743 kb on - strand, within BT0664 at 819.743 kb on - strand, within BT0664 at 819.855 kb on + strand at 819.981 kb on - strand, within BT0665 at 820.034 kb on - strand, within BT0665 at 820.102 kb on - strand, within BT0665 at 820.123 kb on + strand, within BT0665 at 820.123 kb on + strand, within BT0665 at 820.123 kb on + strand, within BT0665 at 820.206 kb on - strand, within BT0665 at 820.349 kb on - strand, within BT0665 at 820.355 kb on - strand, within BT0665 at 820.404 kb on - strand, within BT0665 at 820.419 kb on - strand, within BT0665 at 820.584 kb on + strand at 820.589 kb on - strand at 820.645 kb on + strand at 820.657 kb on - strand, within BT0666 at 820.670 kb on + strand, within BT0666 at 820.758 kb on - strand, within BT0666 at 820.789 kb on - strand, within BT0666 at 820.790 kb on - strand, within BT0666 at 820.790 kb on - strand, within BT0666 at 820.794 kb on - strand, within BT0666 at 820.853 kb on + strand, within BT0666 at 820.854 kb on - strand, within BT0666 at 820.864 kb on - strand, within BT0666 at 820.964 kb on - strand, within BT0666 at 821.018 kb on - strand, within BT0666 at 821.023 kb on + strand, within BT0666 at 821.194 kb on + strand, within BT0666 at 821.203 kb on - strand, within BT0666 at 821.203 kb on - strand, within BT0666 at 821.227 kb on - strand, within BT0666 at 821.229 kb on - strand, within BT0666 at 821.235 kb on - strand, within BT0666 at 821.267 kb on + strand, within BT0666 at 821.332 kb on + strand, within BT0666 at 821.524 kb on + strand, within BT0666 at 821.525 kb on - strand, within BT0666
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml remove 818,937 - BT0664 0.17 -0.2 819,061 - BT0664 0.28 +1.0 819,259 - BT0664 0.45 +2.6 819,309 - BT0664 0.50 -1.0 819,350 - BT0664 0.53 -0.8 819,429 - BT0664 0.60 -0.3 819,437 - BT0664 0.61 -2.4 819,474 - BT0664 0.64 -1.4 819,523 - BT0664 0.68 -1.3 819,545 + BT0664 0.70 +0.0 819,622 + BT0664 0.77 +0.6 819,689 - BT0664 0.83 -1.2 819,713 - BT0664 0.85 -0.2 819,742 + BT0664 0.87 -1.9 819,743 - BT0664 0.87 -0.9 819,743 - BT0664 0.87 -2.3 819,855 + -0.4 819,981 - BT0665 0.13 +2.7 820,034 - BT0665 0.21 +2.2 820,102 - BT0665 0.32 -0.2 820,123 + BT0665 0.35 -0.9 820,123 + BT0665 0.35 -0.3 820,123 + BT0665 0.35 +1.2 820,206 - BT0665 0.48 +0.9 820,349 - BT0665 0.71 -1.0 820,355 - BT0665 0.72 +1.9 820,404 - BT0665 0.79 -0.7 820,419 - BT0665 0.82 +0.2 820,584 + -1.2 820,589 - +0.4 820,645 + -1.4 820,657 - BT0666 0.11 +1.6 820,670 + BT0666 0.12 +1.1 820,758 - BT0666 0.19 -0.4 820,789 - BT0666 0.22 -1.4 820,790 - BT0666 0.22 +2.1 820,790 - BT0666 0.22 -1.4 820,794 - BT0666 0.23 -1.4 820,853 + BT0666 0.28 -1.4 820,854 - BT0666 0.28 -1.1 820,864 - BT0666 0.29 -1.2 820,964 - BT0666 0.37 -0.6 821,018 - BT0666 0.42 -0.0 821,023 + BT0666 0.43 -0.4 821,194 + BT0666 0.58 -1.6 821,203 - BT0666 0.58 -1.4 821,203 - BT0666 0.58 -2.7 821,227 - BT0666 0.60 -1.9 821,229 - BT0666 0.61 +0.4 821,235 - BT0666 0.61 +1.3 821,267 + BT0666 0.64 +1.4 821,332 + BT0666 0.70 +0.0 821,524 + BT0666 0.86 +1.0 821,525 - BT0666 0.86 +1.6
Or see this region's nucleotide sequence