Experiment: Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0494 and BT0495 are separated by 31 nucleotides BT0495 and BT0496 are separated by 42 nucleotides
BT0494: BT0494 - protoporphyrin IX magnesium chelatase (NCBI ptt file), at 608,809 to 611,373
BT0494
BT0495: BT0495 - cobalamin biosynthesis protein (NCBI ptt file), at 611,405 to 613,201
BT0495
BT0496: BT0496 - TonB-dependent receptor (NCBI ptt file), at 613,244 to 615,391
BT0496
Position (kb) 611
612
613
614 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 610.549 kb on - strand, within BT0494 at 610.608 kb on + strand, within BT0494 at 610.609 kb on - strand, within BT0494 at 610.708 kb on - strand, within BT0494 at 611.257 kb on - strand at 611.374 kb on + strand at 611.445 kb on + strand at 611.446 kb on - strand at 611.494 kb on - strand at 611.499 kb on + strand at 611.796 kb on + strand, within BT0495 at 611.796 kb on + strand, within BT0495 at 611.796 kb on + strand, within BT0495 at 612.020 kb on - strand, within BT0495 at 612.021 kb on + strand, within BT0495 at 612.022 kb on - strand, within BT0495 at 612.066 kb on - strand, within BT0495 at 612.120 kb on + strand, within BT0495 at 612.121 kb on - strand, within BT0495 at 612.129 kb on - strand, within BT0495 at 612.181 kb on + strand, within BT0495 at 612.181 kb on + strand, within BT0495 at 612.238 kb on + strand, within BT0495 at 612.239 kb on - strand, within BT0495 at 612.247 kb on - strand, within BT0495 at 612.314 kb on - strand, within BT0495 at 612.424 kb on + strand, within BT0495 at 612.777 kb on + strand, within BT0495 at 612.778 kb on - strand, within BT0495 at 612.845 kb on + strand, within BT0495 at 612.897 kb on + strand, within BT0495 at 612.897 kb on + strand, within BT0495 at 612.898 kb on - strand, within BT0495 at 613.208 kb on + strand at 613.222 kb on + strand at 613.223 kb on - strand at 613.223 kb on - strand at 613.233 kb on - strand at 613.265 kb on + strand at 613.278 kb on - strand at 613.341 kb on + strand at 613.387 kb on + strand at 613.420 kb on + strand at 613.479 kb on + strand, within BT0496 at 613.633 kb on + strand, within BT0496 at 613.633 kb on + strand, within BT0496 at 613.633 kb on + strand, within BT0496 at 613.635 kb on + strand, within BT0496 at 613.636 kb on - strand, within BT0496 at 613.636 kb on - strand, within BT0496 at 613.636 kb on - strand, within BT0496 at 613.728 kb on + strand, within BT0496 at 613.762 kb on + strand, within BT0496 at 613.798 kb on + strand at 613.798 kb on + strand, within BT0496 at 613.811 kb on - strand, within BT0496 at 613.897 kb on + strand, within BT0496 at 613.907 kb on - strand, within BT0496 at 613.920 kb on + strand, within BT0496 at 613.920 kb on + strand, within BT0496 at 613.920 kb on + strand, within BT0496 at 613.959 kb on + strand, within BT0496 at 613.970 kb on + strand, within BT0496 at 613.992 kb on + strand, within BT0496 at 613.993 kb on - strand, within BT0496 at 614.025 kb on - strand, within BT0496 at 614.072 kb on - strand, within BT0496
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml remove 610,549 - BT0494 0.68 -1.0 610,608 + BT0494 0.70 -1.9 610,609 - BT0494 0.70 -1.2 610,708 - BT0494 0.74 -0.4 611,257 - -0.0 611,374 + +2.2 611,445 + +0.8 611,446 - -0.2 611,494 - -3.3 611,499 + -0.4 611,796 + BT0495 0.22 -0.0 611,796 + BT0495 0.22 -2.0 611,796 + BT0495 0.22 +0.9 612,020 - BT0495 0.34 +1.0 612,021 + BT0495 0.34 -1.5 612,022 - BT0495 0.34 -1.4 612,066 - BT0495 0.37 +0.8 612,120 + BT0495 0.40 +0.3 612,121 - BT0495 0.40 +1.2 612,129 - BT0495 0.40 -1.0 612,181 + BT0495 0.43 +0.3 612,181 + BT0495 0.43 -2.5 612,238 + BT0495 0.46 +2.2 612,239 - BT0495 0.46 -0.7 612,247 - BT0495 0.47 -0.2 612,314 - BT0495 0.51 -2.5 612,424 + BT0495 0.57 -1.0 612,777 + BT0495 0.76 -1.7 612,778 - BT0495 0.76 -1.2 612,845 + BT0495 0.80 -1.4 612,897 + BT0495 0.83 -2.2 612,897 + BT0495 0.83 -1.4 612,898 - BT0495 0.83 -2.0 613,208 + +0.7 613,222 + +2.4 613,223 - -2.4 613,223 - +0.6 613,233 - -2.1 613,265 + +0.6 613,278 - -1.7 613,341 + +0.6 613,387 + +0.2 613,420 + -0.8 613,479 + BT0496 0.11 -1.0 613,633 + BT0496 0.18 -1.0 613,633 + BT0496 0.18 -1.5 613,633 + BT0496 0.18 +0.2 613,635 + BT0496 0.18 +1.4 613,636 - BT0496 0.18 +0.6 613,636 - BT0496 0.18 -1.4 613,636 - BT0496 0.18 -0.4 613,728 + BT0496 0.23 -1.3 613,762 + BT0496 0.24 +1.6 613,798 + +1.6 613,798 + BT0496 0.26 -1.6 613,811 - BT0496 0.26 +0.2 613,897 + BT0496 0.30 +0.6 613,907 - BT0496 0.31 -1.3 613,920 + BT0496 0.31 +0.0 613,920 + BT0496 0.31 -1.0 613,920 + BT0496 0.31 +0.0 613,959 + BT0496 0.33 +1.2 613,970 + BT0496 0.34 -0.2 613,992 + BT0496 0.35 -0.2 613,993 - BT0496 0.35 +1.1 614,025 - BT0496 0.36 -1.5 614,072 - BT0496 0.39 -1.5
Or see this region's nucleotide sequence