Experiment: Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0491 and BT0492 overlap by 4 nucleotides BT0492 and BT0493 are separated by 33 nucleotides BT0493 and BT0494 are separated by 51 nucleotides
BT0491: BT0491 - conserved hypothetical protein (NCBI ptt file), at 607,082 to 607,408
BT0491
BT0492: BT0492 - integral membrane protein (NCBI ptt file), at 607,405 to 608,022
BT0492
BT0493: BT0493 - hypothetical protein (NCBI ptt file), at 608,056 to 608,757
BT0493
BT0494: BT0494 - protoporphyrin IX magnesium chelatase (NCBI ptt file), at 608,809 to 611,373
BT0494
Position (kb) 608
609 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 607.079 kb on + strand at 607.080 kb on - strand at 607.112 kb on - strand at 607.214 kb on - strand, within BT0491 at 607.289 kb on - strand, within BT0491 at 607.289 kb on - strand, within BT0491 at 607.307 kb on + strand, within BT0491 at 607.476 kb on + strand, within BT0492 at 607.578 kb on - strand, within BT0492 at 607.578 kb on - strand, within BT0492 at 607.593 kb on + strand, within BT0492 at 607.694 kb on - strand, within BT0492 at 607.780 kb on - strand, within BT0492 at 607.910 kb on + strand, within BT0492 at 607.958 kb on - strand, within BT0492 at 608.005 kb on - strand at 608.005 kb on - strand at 608.013 kb on + strand at 608.014 kb on - strand at 608.027 kb on - strand at 608.140 kb on + strand, within BT0493 at 608.288 kb on + strand, within BT0493 at 608.296 kb on + strand, within BT0493 at 608.391 kb on - strand, within BT0493 at 608.462 kb on - strand, within BT0493 at 608.564 kb on - strand, within BT0493 at 608.625 kb on - strand, within BT0493 at 608.724 kb on + strand at 608.734 kb on - strand at 608.737 kb on + strand at 608.737 kb on + strand at 608.761 kb on - strand at 608.810 kb on + strand at 608.863 kb on - strand at 608.904 kb on + strand at 608.905 kb on - strand at 608.994 kb on + strand at 609.277 kb on + strand, within BT0494 at 609.278 kb on - strand, within BT0494 at 609.278 kb on - strand, within BT0494 at 609.283 kb on - strand, within BT0494 at 609.286 kb on + strand, within BT0494 at 609.345 kb on + strand, within BT0494 at 609.346 kb on - strand, within BT0494 at 609.619 kb on + strand, within BT0494 at 609.620 kb on - strand, within BT0494 at 609.699 kb on - strand, within BT0494 at 609.719 kb on + strand, within BT0494
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml remove 607,079 + -2.0 607,080 - -0.4 607,112 - -0.0 607,214 - BT0491 0.40 -1.7 607,289 - BT0491 0.63 -0.7 607,289 - BT0491 0.63 -3.4 607,307 + BT0491 0.69 -0.5 607,476 + BT0492 0.11 -1.8 607,578 - BT0492 0.28 -1.5 607,578 - BT0492 0.28 +2.2 607,593 + BT0492 0.30 -0.1 607,694 - BT0492 0.47 -1.2 607,780 - BT0492 0.61 -0.8 607,910 + BT0492 0.82 +1.1 607,958 - BT0492 0.89 -0.4 608,005 - +0.9 608,005 - +1.9 608,013 + +1.6 608,014 - +0.0 608,027 - -1.6 608,140 + BT0493 0.12 -0.7 608,288 + BT0493 0.33 +1.2 608,296 + BT0493 0.34 -0.8 608,391 - BT0493 0.48 -1.2 608,462 - BT0493 0.58 -1.4 608,564 - BT0493 0.72 +1.0 608,625 - BT0493 0.81 -1.4 608,724 + -1.1 608,734 - -1.3 608,737 + +1.4 608,737 + +0.4 608,761 - +0.6 608,810 + +0.9 608,863 - -2.4 608,904 + -1.8 608,905 - +0.0 608,994 + -0.4 609,277 + BT0494 0.18 -0.5 609,278 - BT0494 0.18 -0.7 609,278 - BT0494 0.18 -0.2 609,283 - BT0494 0.18 -0.4 609,286 + BT0494 0.19 -1.8 609,345 + BT0494 0.21 +1.5 609,346 - BT0494 0.21 +1.1 609,619 + BT0494 0.32 +0.5 609,620 - BT0494 0.32 +1.9 609,699 - BT0494 0.35 -1.0 609,719 + BT0494 0.35 -2.1
Or see this region's nucleotide sequence