Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x; and Iron (II) 0.209 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19795 and BWI76_RS19800 are separated by 3 nucleotides BWI76_RS19800 and BWI76_RS19805 are separated by 330 nucleotides BWI76_RS19805 and BWI76_RS19810 overlap by 4 nucleotides BWI76_RS19810 and BWI76_RS19815 are separated by 147 nucleotides
BWI76_RS19795: BWI76_RS19795 - microcin C ABC transporter ATP-binding protein YejF, at 4,139,624 to 4,141,213
_RS19795
BWI76_RS19800: BWI76_RS19800 - hypothetical protein, at 4,141,217 to 4,141,561
_RS19800
BWI76_RS19805: BWI76_RS19805 - Bcr/CflA family multidrug efflux MFS transporter, at 4,141,892 to 4,143,088
_RS19805
BWI76_RS19810: BWI76_RS19810 - 16S rRNA pseudouridine(516) synthase, at 4,143,085 to 4,143,804
_RS19810
BWI76_RS19815: BWI76_RS19815 - ATP-dependent helicase, at 4,143,952 to 4,145,709
_RS19815
Position (kb)
4141
4142
4143
4144 Strain fitness (log2 ratio)
-1
0
1 at 4140.926 kb on + strand, within BWI76_RS19795 at 4141.032 kb on - strand, within BWI76_RS19795 at 4141.052 kb on - strand, within BWI76_RS19795 at 4141.109 kb on - strand at 4141.152 kb on - strand at 4141.532 kb on + strand at 4142.439 kb on - strand at 4142.620 kb on - strand, within BWI76_RS19805 at 4142.877 kb on - strand, within BWI76_RS19805 at 4143.089 kb on + strand at 4143.760 kb on - strand at 4143.956 kb on + strand at 4143.964 kb on - strand at 4143.964 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x; and Iron (II) 0.209 mg/mL remove 4,140,926 + BWI76_RS19795 0.82 +0.3 4,141,032 - BWI76_RS19795 0.89 -0.1 4,141,052 - BWI76_RS19795 0.90 -0.2 4,141,109 - +0.7 4,141,152 - +0.3 4,141,532 + +0.4 4,142,439 - -0.9 4,142,620 - BWI76_RS19805 0.61 -1.1 4,142,877 - BWI76_RS19805 0.82 -1.6 4,143,089 + -0.7 4,143,760 - -0.9 4,143,956 + -0.8 4,143,964 - -0.0 4,143,964 - -0.0
Or see this region's nucleotide sequence