Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20730 and BWI76_RS20735 overlap by 8 nucleotides BWI76_RS20735 and BWI76_RS20740 overlap by 1 nucleotides BWI76_RS20740 and BWI76_RS20745 are separated by 133 nucleotides
BWI76_RS20730: BWI76_RS20730 - hypothetical protein, at 4,334,413 to 4,334,610
_RS20730
BWI76_RS20735: BWI76_RS20735 - N-acetylmuramoyl-L-alanine amidase, at 4,334,603 to 4,335,478
_RS20735
BWI76_RS20740: BWI76_RS20740 - coproporphyrinogen III oxidase, at 4,335,478 to 4,336,377
_RS20740
BWI76_RS20745: BWI76_RS20745 - AraC family transcriptional regulator, at 4,336,511 to 4,337,563
_RS20745
Position (kb) 4335
4336
4337 Strain fitness (log2 ratio) -1
0
1 at 4334.572 kb on - strand, within BWI76_RS20730 at 4334.904 kb on + strand, within BWI76_RS20735 at 4334.945 kb on - strand, within BWI76_RS20735 at 4335.154 kb on - strand, within BWI76_RS20735 at 4335.331 kb on - strand, within BWI76_RS20735 at 4335.498 kb on + strand at 4335.498 kb on + strand at 4335.710 kb on + strand, within BWI76_RS20740 at 4335.723 kb on - strand, within BWI76_RS20740 at 4335.781 kb on - strand, within BWI76_RS20740 at 4335.938 kb on - strand, within BWI76_RS20740 at 4335.982 kb on + strand, within BWI76_RS20740 at 4336.155 kb on - strand, within BWI76_RS20740 at 4336.544 kb on - strand at 4336.633 kb on - strand, within BWI76_RS20745 at 4336.656 kb on - strand, within BWI76_RS20745 at 4336.663 kb on + strand, within BWI76_RS20745 at 4336.788 kb on - strand, within BWI76_RS20745 at 4336.818 kb on + strand, within BWI76_RS20745 at 4336.935 kb on - strand, within BWI76_RS20745 at 4337.033 kb on - strand, within BWI76_RS20745 at 4337.147 kb on - strand, within BWI76_RS20745 at 4337.148 kb on - strand, within BWI76_RS20745 at 4337.296 kb on + strand, within BWI76_RS20745
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x remove 4,334,572 - BWI76_RS20730 0.80 +0.4 4,334,904 + BWI76_RS20735 0.34 -0.6 4,334,945 - BWI76_RS20735 0.39 -0.2 4,335,154 - BWI76_RS20735 0.63 +0.0 4,335,331 - BWI76_RS20735 0.83 -0.8 4,335,498 + -1.6 4,335,498 + -1.2 4,335,710 + BWI76_RS20740 0.26 -1.4 4,335,723 - BWI76_RS20740 0.27 -1.5 4,335,781 - BWI76_RS20740 0.34 -1.5 4,335,938 - BWI76_RS20740 0.51 -0.2 4,335,982 + BWI76_RS20740 0.56 +0.8 4,336,155 - BWI76_RS20740 0.75 -1.6 4,336,544 - +0.3 4,336,633 - BWI76_RS20745 0.12 +0.1 4,336,656 - BWI76_RS20745 0.14 +0.4 4,336,663 + BWI76_RS20745 0.14 +1.7 4,336,788 - BWI76_RS20745 0.26 -0.5 4,336,818 + BWI76_RS20745 0.29 +0.3 4,336,935 - BWI76_RS20745 0.40 +0.4 4,337,033 - BWI76_RS20745 0.50 -0.1 4,337,147 - BWI76_RS20745 0.60 +0.2 4,337,148 - BWI76_RS20745 0.60 -0.5 4,337,296 + BWI76_RS20745 0.75 +0.6
Or see this region's nucleotide sequence