Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13040 and BWI76_RS13045 are separated by 161 nucleotides BWI76_RS13045 and BWI76_RS13050 are separated by 148 nucleotides BWI76_RS13050 and BWI76_RS13055 are separated by 128 nucleotides
BWI76_RS13040: BWI76_RS13040 - transcriptional regulator, at 2,721,182 to 2,721,985
_RS13040
BWI76_RS13045: BWI76_RS13045 - hypothetical protein, at 2,722,147 to 2,722,542
_RS13045
BWI76_RS13050: BWI76_RS13050 - transcriptional regulator, at 2,722,691 to 2,723,125
_RS13050
BWI76_RS13055: BWI76_RS13055 - NmrA family protein, at 2,723,254 to 2,724,165
_RS13055
Position (kb)
2722
2723
2724 Strain fitness (log2 ratio)
-1
0
1 at 2721.696 kb on + strand, within BWI76_RS13040 at 2721.718 kb on - strand, within BWI76_RS13040 at 2721.776 kb on - strand, within BWI76_RS13040 at 2722.076 kb on - strand at 2722.084 kb on + strand at 2722.193 kb on - strand, within BWI76_RS13045 at 2722.193 kb on - strand, within BWI76_RS13045 at 2722.350 kb on - strand, within BWI76_RS13045 at 2722.350 kb on - strand, within BWI76_RS13045 at 2722.356 kb on + strand, within BWI76_RS13045 at 2722.393 kb on + strand, within BWI76_RS13045 at 2722.416 kb on - strand, within BWI76_RS13045 at 2722.472 kb on - strand, within BWI76_RS13045 at 2722.590 kb on + strand at 2722.672 kb on + strand at 2722.673 kb on + strand at 2722.701 kb on + strand at 2722.920 kb on - strand, within BWI76_RS13050 at 2723.196 kb on + strand at 2723.535 kb on - strand, within BWI76_RS13055 at 2723.740 kb on + strand, within BWI76_RS13055 at 2723.740 kb on + strand, within BWI76_RS13055 at 2723.809 kb on + strand, within BWI76_RS13055 at 2724.098 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x remove 2,721,696 + BWI76_RS13040 0.64 +0.4 2,721,718 - BWI76_RS13040 0.67 -0.3 2,721,776 - BWI76_RS13040 0.74 -0.8 2,722,076 - -0.1 2,722,084 + -0.3 2,722,193 - BWI76_RS13045 0.12 -1.0 2,722,193 - BWI76_RS13045 0.12 +0.2 2,722,350 - BWI76_RS13045 0.51 -1.3 2,722,350 - BWI76_RS13045 0.51 +0.2 2,722,356 + BWI76_RS13045 0.53 -0.2 2,722,393 + BWI76_RS13045 0.62 -0.7 2,722,416 - BWI76_RS13045 0.68 -1.1 2,722,472 - BWI76_RS13045 0.82 -0.5 2,722,590 + -0.1 2,722,672 + -0.1 2,722,673 + +0.5 2,722,701 + +0.5 2,722,920 - BWI76_RS13050 0.53 -1.0 2,723,196 + +0.2 2,723,535 - BWI76_RS13055 0.31 -0.8 2,723,740 + BWI76_RS13055 0.53 +0.3 2,723,740 + BWI76_RS13055 0.53 +0.1 2,723,809 + BWI76_RS13055 0.61 +0.2 2,724,098 - +0.3
Or see this region's nucleotide sequence