Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07155 and BWI76_RS07160 are separated by 173 nucleotides BWI76_RS07160 and BWI76_RS07165 are separated by 9 nucleotides BWI76_RS07165 and BWI76_RS07170 are separated by 138 nucleotides
BWI76_RS07155: BWI76_RS07155 - fibronectin type III domain-containing protein, at 1,502,511 to 1,504,487
_RS07155
BWI76_RS07160: BWI76_RS07160 - MBL fold hydrolase, at 1,504,661 to 1,505,488
_RS07160
BWI76_RS07165: BWI76_RS07165 - hypothetical protein, at 1,505,498 to 1,506,040
_RS07165
BWI76_RS07170: BWI76_RS07170 - LysR family transcriptional regulator, at 1,506,179 to 1,507,054
_RS07170
Position (kb)
1504
1505
1506 Strain fitness (log2 ratio)
-2
-1
0
1 at 1503.777 kb on - strand, within BWI76_RS07155 at 1503.896 kb on + strand, within BWI76_RS07155 at 1503.902 kb on - strand, within BWI76_RS07155 at 1503.902 kb on - strand, within BWI76_RS07155 at 1503.964 kb on - strand, within BWI76_RS07155 at 1504.062 kb on + strand, within BWI76_RS07155 at 1504.079 kb on + strand, within BWI76_RS07155 at 1504.079 kb on + strand, within BWI76_RS07155 at 1504.087 kb on - strand, within BWI76_RS07155 at 1504.087 kb on - strand, within BWI76_RS07155 at 1504.385 kb on + strand at 1504.409 kb on + strand at 1504.449 kb on + strand at 1504.463 kb on + strand at 1504.587 kb on + strand at 1504.587 kb on + strand at 1504.633 kb on + strand at 1504.660 kb on - strand at 1504.675 kb on + strand at 1504.700 kb on + strand at 1504.712 kb on + strand at 1504.720 kb on - strand at 1504.799 kb on + strand, within BWI76_RS07160 at 1504.802 kb on - strand, within BWI76_RS07160 at 1504.802 kb on - strand, within BWI76_RS07160 at 1504.941 kb on - strand, within BWI76_RS07160 at 1505.289 kb on + strand, within BWI76_RS07160 at 1505.831 kb on - strand, within BWI76_RS07165 at 1505.861 kb on + strand, within BWI76_RS07165 at 1506.224 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x remove 1,503,777 - BWI76_RS07155 0.64 -0.2 1,503,896 + BWI76_RS07155 0.70 -0.4 1,503,902 - BWI76_RS07155 0.70 +0.6 1,503,902 - BWI76_RS07155 0.70 -0.8 1,503,964 - BWI76_RS07155 0.73 -0.3 1,504,062 + BWI76_RS07155 0.78 -0.3 1,504,079 + BWI76_RS07155 0.79 +0.2 1,504,079 + BWI76_RS07155 0.79 -1.7 1,504,087 - BWI76_RS07155 0.80 -0.0 1,504,087 - BWI76_RS07155 0.80 -0.1 1,504,385 + -0.4 1,504,409 + +0.0 1,504,449 + +0.2 1,504,463 + +0.5 1,504,587 + +0.1 1,504,587 + -0.1 1,504,633 + -0.1 1,504,660 - -0.2 1,504,675 + +1.1 1,504,700 + -0.3 1,504,712 + -0.8 1,504,720 - +0.6 1,504,799 + BWI76_RS07160 0.17 -1.2 1,504,802 - BWI76_RS07160 0.17 -2.5 1,504,802 - BWI76_RS07160 0.17 -0.1 1,504,941 - BWI76_RS07160 0.34 -0.2 1,505,289 + BWI76_RS07160 0.76 -1.4 1,505,831 - BWI76_RS07165 0.61 -0.7 1,505,861 + BWI76_RS07165 0.67 -0.2 1,506,224 - +0.6
Or see this region's nucleotide sequence