Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00555 and BWI76_RS00560 overlap by 4 nucleotides BWI76_RS00560 and BWI76_RS00565 are separated by 90 nucleotides BWI76_RS00565 and BWI76_RS00570 overlap by 1 nucleotides BWI76_RS00570 and BWI76_RS00575 are separated by 100 nucleotides
BWI76_RS00555: BWI76_RS00555 - PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN, at 112,748 to 113,185
_RS00555
BWI76_RS00560: BWI76_RS00560 - hypothetical protein, at 113,182 to 113,736
_RS00560
BWI76_RS00565: BWI76_RS00565 - branched-chain amino acid transport, at 113,827 to 114,150
_RS00565
BWI76_RS00570: BWI76_RS00570 - AzlC family protein, at 114,150 to 114,809
_RS00570
BWI76_RS00575: BWI76_RS00575 - DNA-binding protein, at 114,910 to 115,458
_RS00575
Position (kb) 113
114
115 Strain fitness (log2 ratio) -1
0
1
2 at 112.856 kb on + strand, within BWI76_RS00555 at 112.864 kb on - strand, within BWI76_RS00555 at 112.864 kb on - strand, within BWI76_RS00555 at 112.906 kb on - strand, within BWI76_RS00555 at 112.906 kb on - strand, within BWI76_RS00555 at 112.956 kb on + strand, within BWI76_RS00555 at 112.983 kb on + strand, within BWI76_RS00555 at 112.983 kb on + strand, within BWI76_RS00555 at 112.983 kb on + strand, within BWI76_RS00555 at 112.990 kb on - strand, within BWI76_RS00555 at 112.991 kb on - strand, within BWI76_RS00555 at 112.991 kb on - strand, within BWI76_RS00555 at 112.991 kb on - strand, within BWI76_RS00555 at 112.991 kb on - strand, within BWI76_RS00555 at 112.991 kb on - strand, within BWI76_RS00555 at 112.991 kb on - strand, within BWI76_RS00555 at 112.991 kb on - strand, within BWI76_RS00555 at 113.073 kb on - strand, within BWI76_RS00555 at 113.073 kb on - strand, within BWI76_RS00555 at 113.079 kb on + strand, within BWI76_RS00555 at 113.110 kb on - strand, within BWI76_RS00555 at 113.157 kb on + strand at 113.157 kb on + strand at 113.165 kb on - strand at 113.165 kb on - strand at 113.168 kb on - strand at 113.179 kb on + strand at 113.179 kb on + strand at 113.187 kb on - strand at 113.193 kb on + strand at 113.309 kb on + strand, within BWI76_RS00560 at 113.346 kb on + strand, within BWI76_RS00560 at 113.540 kb on + strand, within BWI76_RS00560 at 113.590 kb on - strand, within BWI76_RS00560 at 113.686 kb on + strand at 113.702 kb on - strand at 113.970 kb on + strand, within BWI76_RS00565 at 113.970 kb on + strand, within BWI76_RS00565 at 113.996 kb on + strand, within BWI76_RS00565 at 114.014 kb on - strand, within BWI76_RS00565 at 114.032 kb on + strand, within BWI76_RS00565 at 114.255 kb on + strand, within BWI76_RS00570 at 114.255 kb on + strand, within BWI76_RS00570 at 114.448 kb on - strand, within BWI76_RS00570 at 114.461 kb on + strand, within BWI76_RS00570 at 114.539 kb on + strand, within BWI76_RS00570 at 114.547 kb on - strand, within BWI76_RS00570 at 114.547 kb on - strand, within BWI76_RS00570 at 114.547 kb on - strand, within BWI76_RS00570 at 114.646 kb on - strand, within BWI76_RS00570 at 114.679 kb on - strand, within BWI76_RS00570 at 114.704 kb on - strand, within BWI76_RS00570 at 114.718 kb on + strand, within BWI76_RS00570 at 114.726 kb on - strand, within BWI76_RS00570 at 114.761 kb on - strand at 114.775 kb on - strand at 114.911 kb on - strand at 114.916 kb on - strand at 114.967 kb on + strand, within BWI76_RS00575 at 115.127 kb on - strand, within BWI76_RS00575
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x remove 112,856 + BWI76_RS00555 0.25 -1.1 112,864 - BWI76_RS00555 0.26 +0.4 112,864 - BWI76_RS00555 0.26 -0.9 112,906 - BWI76_RS00555 0.36 -0.3 112,906 - BWI76_RS00555 0.36 +0.3 112,956 + BWI76_RS00555 0.47 -0.4 112,983 + BWI76_RS00555 0.54 -0.8 112,983 + BWI76_RS00555 0.54 -0.2 112,983 + BWI76_RS00555 0.54 +0.5 112,990 - BWI76_RS00555 0.55 -0.8 112,991 - BWI76_RS00555 0.55 +0.3 112,991 - BWI76_RS00555 0.55 +1.2 112,991 - BWI76_RS00555 0.55 +0.2 112,991 - BWI76_RS00555 0.55 +0.1 112,991 - BWI76_RS00555 0.55 +0.8 112,991 - BWI76_RS00555 0.55 -0.1 112,991 - BWI76_RS00555 0.55 -0.2 113,073 - BWI76_RS00555 0.74 +0.1 113,073 - BWI76_RS00555 0.74 +0.5 113,079 + BWI76_RS00555 0.76 -0.1 113,110 - BWI76_RS00555 0.83 -0.0 113,157 + -0.4 113,157 + +1.0 113,165 - +0.5 113,165 - +2.2 113,168 - -0.0 113,179 + +0.3 113,179 + +0.1 113,187 - +0.5 113,193 + +0.3 113,309 + BWI76_RS00560 0.23 +0.1 113,346 + BWI76_RS00560 0.30 +0.3 113,540 + BWI76_RS00560 0.65 -0.1 113,590 - BWI76_RS00560 0.74 +0.2 113,686 + -0.0 113,702 - -0.9 113,970 + BWI76_RS00565 0.44 -0.5 113,970 + BWI76_RS00565 0.44 -1.1 113,996 + BWI76_RS00565 0.52 -1.2 114,014 - BWI76_RS00565 0.58 -1.5 114,032 + BWI76_RS00565 0.63 -0.0 114,255 + BWI76_RS00570 0.16 -0.1 114,255 + BWI76_RS00570 0.16 +0.3 114,448 - BWI76_RS00570 0.45 +0.3 114,461 + BWI76_RS00570 0.47 -0.5 114,539 + BWI76_RS00570 0.59 -0.0 114,547 - BWI76_RS00570 0.60 +0.6 114,547 - BWI76_RS00570 0.60 -0.3 114,547 - BWI76_RS00570 0.60 +0.0 114,646 - BWI76_RS00570 0.75 -0.3 114,679 - BWI76_RS00570 0.80 -0.7 114,704 - BWI76_RS00570 0.84 -0.1 114,718 + BWI76_RS00570 0.86 -0.0 114,726 - BWI76_RS00570 0.87 -0.1 114,761 - +0.2 114,775 - +0.3 114,911 - +0.3 114,916 - +0.1 114,967 + BWI76_RS00575 0.10 -0.1 115,127 - BWI76_RS00575 0.40 -0.8
Or see this region's nucleotide sequence