Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001276

Experiment: RCH2_defined_glucose_5mM with Chlorogenic 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose_5mM with Chlorogenic 1 mM
1,425,015	+				-2.3
1,425,016	-				-2.3
1,425,016	-				-1.1
1,425,016	-				-1.2
1,425,016	-				-1.1
1,425,016	-				+0.2
1,425,031	-				-0.2
1,425,031	-				-0.8
1,425,031	-				-2.3
1,425,087	-				-3.6
1,425,087	-				-4.3
1,425,625	+		ABIE53_001274	0.81	-1.2
1,425,692	+				-2.4
1,425,692	+				-2.4
1,425,693	-				+0.2
1,425,693	-				-1.7
1,425,792	-				-0.8
1,425,898	+		ABIE53_001275	0.48	-2.4
1,425,899	-		ABIE53_001275	0.49	-3.8
1,426,035	+				-1.4
1,426,036	-				-2.5
1,426,036	-				-0.2
1,426,036	-				+1.8
1,426,036	-				-2.4
1,426,036	-				-0.2
1,426,134	+		ABIE53_001276	0.15	-1.9
1,426,134	+		ABIE53_001276	0.15	-3.5
1,426,134	+		ABIE53_001276	0.15	-2.4
1,426,135	-		ABIE53_001276	0.15	-1.1
1,426,135	-		ABIE53_001276	0.15	-0.8
1,426,135	-		ABIE53_001276	0.15	-0.2
1,426,320	-		ABIE53_001276	0.29	-0.6
1,426,320	-		ABIE53_001276	0.29	-3.4
1,426,425	+		ABIE53_001276	0.36	-2.5
1,426,425	+		ABIE53_001276	0.36	-3.1
1,426,425	+		ABIE53_001276	0.36	-2.2
1,426,426	-		ABIE53_001276	0.36	-3.2
1,426,426	-		ABIE53_001276	0.36	-1.9
1,426,604	-		ABIE53_001276	0.50	-2.5
1,426,604	-		ABIE53_001276	0.50	-1.4
1,426,611	+		ABIE53_001276	0.50	-2.9
1,426,612	-		ABIE53_001276	0.50	-3.8
1,426,612	-		ABIE53_001276	0.50	-3.4
1,426,755	+		ABIE53_001276	0.61	-0.2
1,426,756	-		ABIE53_001276	0.61	+0.8
1,426,756	-		ABIE53_001276	0.61	-3.6
1,426,766	-		ABIE53_001276	0.62	-3.5
1,426,770	+		ABIE53_001276	0.62	-4.0
1,426,770	+		ABIE53_001276	0.62	-2.2
1,426,770	+		ABIE53_001276	0.62	-0.6
1,426,770	+		ABIE53_001276	0.62	-1.7
1,426,771	-		ABIE53_001276	0.62	-2.2
1,426,771	-		ABIE53_001276	0.62	-1.9
1,426,771	-		ABIE53_001276	0.62	-1.9
1,426,771	-		ABIE53_001276	0.62	-2.5
1,426,771	-		ABIE53_001276	0.62	+0.2
1,426,771	-		ABIE53_001276	0.62	-0.2
1,426,771	-		ABIE53_001276	0.62	-4.9
1,426,771	-		ABIE53_001276	0.62	-0.8
1,426,771	-		ABIE53_001276	0.62	-4.2
1,426,771	-		ABIE53_001276	0.62	-2.2
1,426,938	+		ABIE53_001276	0.74	+0.2
1,426,939	-		ABIE53_001276	0.75	-2.1
1,427,078	+		ABIE53_001276	0.85	-4.4
1,427,078	+		ABIE53_001276	0.85	-2.9
1,427,079	-		ABIE53_001276	0.85	-2.9
1,427,079	-		ABIE53_001276	0.85	+0.2
1,427,079	-		ABIE53_001276	0.85	-1.1
1,427,079	-		ABIE53_001276	0.85	-1.8
1,427,079	-		ABIE53_001276	0.85	-4.4
1,427,079	-		ABIE53_001276	0.85	-1.8
1,427,079	-		ABIE53_001276	0.85	-2.8
1,427,079	-		ABIE53_001276	0.85	-1.7
1,427,079	-		ABIE53_001276	0.85	-3.2
1,427,079	-		ABIE53_001276	0.85	-0.6
1,427,079	-		ABIE53_001276	0.85	-0.8
1,427,115	+		ABIE53_001276	0.88	-1.8
1,427,115	+		ABIE53_001276	0.88	-3.8
1,427,257	-				-0.8
1,427,346	-				-2.2
1,427,379	-				-2.2
1,427,388	-				-0.4
1,427,388	-				+0.2
1,427,406	+				-1.9
1,427,406	+				-2.8
1,427,407	-				-3.1
1,427,407	-				-1.8
1,427,412	+				+0.0
1,427,412	+				-2.8
1,427,413	-				-1.4
1,427,413	-				-3.6
1,427,413	-				+0.2
1,427,413	-				-2.6
1,427,413	-				+0.2
1,427,649	+				-0.8
1,427,763	+				-1.7
1,427,763	+				-0.3
1,427,763	+				-2.6
1,427,763	+				-3.0
1,427,763	+				-3.8
1,427,763	+				-1.3
1,427,763	+				-3.6
1,427,763	+				-2.2
1,427,763	+				-1.3
1,427,763	+				-3.3
1,427,763	+				-0.3
1,427,763	+				-1.4
1,427,763	+				-2.3
1,427,764	-				-1.1
1,427,764	-				+0.7
1,427,764	-				-2.9
1,427,764	-				-0.6
1,427,764	-				-3.9
1,427,764	-				-2.6
1,427,764	-				-2.5
1,427,764	-				-1.4
1,427,931	+		ABIE53_001277	0.13	-3.4
1,427,931	+		ABIE53_001277	0.13	-2.2
1,428,159	+		ABIE53_001277	0.31	-1.4
1,428,159	+		ABIE53_001277	0.31	-2.3
1,428,159	+		ABIE53_001277	0.31	-3.3
1,428,160	-		ABIE53_001277	0.31	-2.7
1,428,160	-		ABIE53_001277	0.31	-1.8
1,428,201	+		ABIE53_001277	0.35	-4.4
1,428,201	+		ABIE53_001277	0.35	-0.6
1,428,201	+		ABIE53_001277	0.35	-5.0
1,428,201	+		ABIE53_001277	0.35	-2.6
1,428,201	+		ABIE53_001277	0.35	-1.4
1,428,201	+		ABIE53_001277	0.35	-2.7
1,428,201	+		ABIE53_001277	0.35	-4.5
1,428,201	+		ABIE53_001277	0.35	-0.8
1,428,201	+		ABIE53_001277	0.35	-3.8
1,428,201	+		ABIE53_001277	0.35	-0.6
1,428,201	+		ABIE53_001277	0.35	+0.4
1,428,201	+		ABIE53_001277	0.35	-3.7
1,428,201	+		ABIE53_001277	0.35	-0.6
1,428,202	-		ABIE53_001277	0.35	-3.3
1,428,202	-		ABIE53_001277	0.35	-4.3
1,428,202	-		ABIE53_001277	0.35	-3.2
1,428,202	-		ABIE53_001277	0.35	-1.7
1,428,202	-		ABIE53_001277	0.35	-2.4
1,428,202	-		ABIE53_001277	0.35	-0.3
1,428,202	-		ABIE53_001277	0.35	-0.8
1,428,202	-		ABIE53_001277	0.35	-0.8
1,428,202	-		ABIE53_001277	0.35	-2.2
1,428,202	-		ABIE53_001277	0.35	-4.4
1,428,202	-		ABIE53_001277	0.35	-3.1