Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19740 and BWI76_RS19745 are separated by 25 nucleotides BWI76_RS19745 and BWI76_RS19750 are separated by 148 nucleotides BWI76_RS19750 and BWI76_RS19755 are separated by 316 nucleotides
BWI76_RS19740: BWI76_RS19740 - sugar efflux transporter SetB, at 4,127,057 to 4,128,238
_RS19740
BWI76_RS19745: BWI76_RS19745 - zinc/iron-chelating domain-containing protein, at 4,128,264 to 4,128,518
_RS19745
BWI76_RS19750: BWI76_RS19750 - elongation factor P-like protein YeiP, at 4,128,667 to 4,129,239
_RS19750
BWI76_RS19755: BWI76_RS19755 - fructuronate reductase, at 4,129,556 to 4,131,022
_RS19755
Position (kb)
4128
4129
4130 Strain fitness (log2 ratio)
-1
0
1 at 4127.844 kb on + strand, within BWI76_RS19740 at 4128.187 kb on + strand at 4128.208 kb on + strand at 4128.281 kb on + strand at 4128.561 kb on - strand at 4128.644 kb on + strand at 4128.794 kb on + strand, within BWI76_RS19750 at 4128.963 kb on + strand, within BWI76_RS19750 at 4129.178 kb on + strand, within BWI76_RS19750 at 4129.933 kb on - strand, within BWI76_RS19755 at 4129.973 kb on + strand, within BWI76_RS19755 at 4130.183 kb on - strand, within BWI76_RS19755
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x remove 4,127,844 + BWI76_RS19740 0.67 +0.0 4,128,187 + -0.2 4,128,208 + +0.2 4,128,281 + +0.6 4,128,561 - -0.5 4,128,644 + +0.1 4,128,794 + BWI76_RS19750 0.22 -0.3 4,128,963 + BWI76_RS19750 0.52 -0.0 4,129,178 + BWI76_RS19750 0.89 -1.3 4,129,933 - BWI76_RS19755 0.26 -1.2 4,129,973 + BWI76_RS19755 0.28 -1.1 4,130,183 - BWI76_RS19755 0.43 -0.2
Or see this region's nucleotide sequence