Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08260 and BWI76_RS08265 are separated by 129 nucleotides BWI76_RS08265 and BWI76_RS08270 are separated by 291 nucleotides BWI76_RS08270 and BWI76_RS08275 are separated by 50 nucleotides
BWI76_RS08260: BWI76_RS08260 - LysR family transcriptional regulator, at 1,749,079 to 1,750,005
_RS08260
BWI76_RS08265: BWI76_RS08265 - transcriptional repressor, at 1,750,135 to 1,750,587
_RS08265
BWI76_RS08270: BWI76_RS08270 - flavodoxin, at 1,750,879 to 1,751,508
_RS08270
BWI76_RS08275: BWI76_RS08275 - LexA regulated protein, at 1,751,559 to 1,751,852
_RS08275
Position (kb)
1750
1751 Strain fitness (log2 ratio)
-1
0
1 at 1749.594 kb on + strand, within BWI76_RS08260 at 1749.845 kb on - strand, within BWI76_RS08260 at 1750.030 kb on - strand at 1750.044 kb on + strand at 1750.688 kb on + strand at 1750.810 kb on + strand at 1751.518 kb on + strand at 1751.526 kb on - strand at 1751.571 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x remove 1,749,594 + BWI76_RS08260 0.56 -0.2 1,749,845 - BWI76_RS08260 0.83 -0.0 1,750,030 - +1.4 1,750,044 + -0.0 1,750,688 + -1.1 1,750,810 + -1.0 1,751,518 + -0.5 1,751,526 - -0.2 1,751,571 - +0.3
Or see this region's nucleotide sequence