Experiment: RCH2_defined_glucose_5mM with Chlorogenic 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004419 and ABIE53_004420 are separated by 94 nucleotides ABIE53_004420 and ABIE53_004421 are separated by 155 nucleotides ABIE53_004421 and ABIE53_004422 are separated by 43 nucleotides
ABIE53_004419: ABIE53_004419 - ribose transport system substrate-binding protein, at 607,302 to 608,264
_004419
ABIE53_004420: ABIE53_004420 - hypothetical protein, at 608,359 to 609,699
_004420
ABIE53_004421: ABIE53_004421 - methylated-DNA-[protein]-cysteine S-methyltransferase, at 609,855 to 610,457
_004421
ABIE53_004422: ABIE53_004422 - hypothetical protein, at 610,501 to 612,084
_004422
Position (kb) 608
609
610 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 607.449 kb on + strand, within ABIE53_004419 at 607.449 kb on + strand, within ABIE53_004419 at 607.450 kb on - strand, within ABIE53_004419 at 607.450 kb on - strand, within ABIE53_004419 at 607.450 kb on - strand, within ABIE53_004419 at 607.493 kb on + strand, within ABIE53_004419 at 607.494 kb on - strand, within ABIE53_004419 at 607.495 kb on + strand, within ABIE53_004419 at 607.495 kb on + strand, within ABIE53_004419 at 607.507 kb on + strand, within ABIE53_004419 at 607.507 kb on + strand, within ABIE53_004419 at 607.507 kb on + strand, within ABIE53_004419 at 607.508 kb on - strand, within ABIE53_004419 at 607.578 kb on + strand, within ABIE53_004419 at 607.578 kb on + strand, within ABIE53_004419 at 607.578 kb on + strand, within ABIE53_004419 at 607.579 kb on - strand, within ABIE53_004419 at 607.579 kb on - strand, within ABIE53_004419 at 607.612 kb on - strand, within ABIE53_004419 at 607.795 kb on + strand, within ABIE53_004419 at 607.795 kb on + strand, within ABIE53_004419 at 607.796 kb on - strand, within ABIE53_004419 at 607.796 kb on - strand, within ABIE53_004419 at 608.093 kb on - strand, within ABIE53_004419 at 608.093 kb on - strand, within ABIE53_004419 at 608.534 kb on + strand, within ABIE53_004420 at 608.534 kb on + strand, within ABIE53_004420 at 608.534 kb on + strand, within ABIE53_004420 at 608.534 kb on + strand, within ABIE53_004420 at 608.534 kb on + strand, within ABIE53_004420 at 608.534 kb on + strand, within ABIE53_004420 at 608.534 kb on + strand, within ABIE53_004420 at 608.535 kb on - strand, within ABIE53_004420 at 608.535 kb on - strand, within ABIE53_004420 at 608.535 kb on - strand, within ABIE53_004420 at 608.592 kb on - strand, within ABIE53_004420 at 608.592 kb on - strand, within ABIE53_004420 at 608.617 kb on + strand, within ABIE53_004420 at 608.618 kb on - strand, within ABIE53_004420 at 608.618 kb on - strand, within ABIE53_004420 at 608.623 kb on + strand, within ABIE53_004420 at 608.623 kb on + strand, within ABIE53_004420 at 608.624 kb on - strand, within ABIE53_004420 at 608.624 kb on - strand, within ABIE53_004420 at 608.652 kb on + strand, within ABIE53_004420 at 608.660 kb on + strand, within ABIE53_004420 at 608.660 kb on + strand, within ABIE53_004420 at 608.661 kb on - strand, within ABIE53_004420 at 608.740 kb on + strand, within ABIE53_004420 at 608.768 kb on + strand, within ABIE53_004420 at 608.768 kb on + strand, within ABIE53_004420 at 608.819 kb on + strand, within ABIE53_004420 at 608.962 kb on - strand, within ABIE53_004420 at 609.091 kb on - strand, within ABIE53_004420 at 609.091 kb on - strand, within ABIE53_004420 at 609.109 kb on - strand, within ABIE53_004420 at 609.159 kb on - strand, within ABIE53_004420 at 609.184 kb on - strand, within ABIE53_004420 at 609.184 kb on - strand, within ABIE53_004420 at 609.190 kb on + strand, within ABIE53_004420 at 609.190 kb on + strand, within ABIE53_004420 at 609.190 kb on + strand, within ABIE53_004420 at 609.190 kb on + strand, within ABIE53_004420 at 609.190 kb on + strand, within ABIE53_004420 at 609.191 kb on - strand, within ABIE53_004420 at 609.191 kb on - strand, within ABIE53_004420 at 609.191 kb on - strand, within ABIE53_004420 at 609.191 kb on - strand, within ABIE53_004420 at 609.705 kb on + strand at 609.740 kb on + strand at 609.822 kb on + strand at 609.822 kb on + strand at 609.822 kb on + strand at 609.823 kb on - strand at 609.861 kb on + strand at 609.861 kb on + strand at 609.861 kb on + strand at 609.861 kb on + strand at 609.862 kb on - strand at 609.862 kb on - strand at 609.862 kb on - strand at 609.867 kb on + strand at 609.867 kb on + strand at 609.867 kb on + strand at 609.867 kb on + strand at 610.035 kb on + strand, within ABIE53_004421 at 610.035 kb on + strand, within ABIE53_004421 at 610.035 kb on + strand, within ABIE53_004421 at 610.036 kb on - strand, within ABIE53_004421 at 610.036 kb on - strand, within ABIE53_004421 at 610.036 kb on - strand, within ABIE53_004421 at 610.145 kb on + strand, within ABIE53_004421 at 610.145 kb on + strand, within ABIE53_004421 at 610.145 kb on + strand, within ABIE53_004421 at 610.145 kb on + strand, within ABIE53_004421 at 610.145 kb on + strand, within ABIE53_004421 at 610.145 kb on + strand, within ABIE53_004421 at 610.145 kb on + strand, within ABIE53_004421 at 610.145 kb on + strand, within ABIE53_004421 at 610.146 kb on - strand, within ABIE53_004421 at 610.146 kb on - strand, within ABIE53_004421 at 610.146 kb on - strand, within ABIE53_004421 at 610.149 kb on + strand, within ABIE53_004421 at 610.149 kb on + strand, within ABIE53_004421 at 610.149 kb on + strand, within ABIE53_004421 at 610.149 kb on + strand, within ABIE53_004421 at 610.150 kb on - strand, within ABIE53_004421 at 610.150 kb on - strand, within ABIE53_004421 at 610.150 kb on - strand, within ABIE53_004421 at 610.150 kb on - strand, within ABIE53_004421 at 610.255 kb on + strand, within ABIE53_004421 at 610.255 kb on + strand, within ABIE53_004421 at 610.255 kb on + strand, within ABIE53_004421 at 610.313 kb on - strand, within ABIE53_004421 at 610.313 kb on - strand, within ABIE53_004421 at 610.386 kb on - strand, within ABIE53_004421 at 610.486 kb on + strand at 610.487 kb on - strand at 610.487 kb on - strand at 610.487 kb on - strand at 610.565 kb on + strand at 610.565 kb on + strand at 610.566 kb on - strand at 610.566 kb on - strand at 610.566 kb on - strand at 610.566 kb on - strand at 610.566 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with Chlorogenic 2 mM remove 607,449 + ABIE53_004419 0.15 -1.9 607,449 + ABIE53_004419 0.15 +0.5 607,450 - ABIE53_004419 0.15 -0.3 607,450 - ABIE53_004419 0.15 +0.5 607,450 - ABIE53_004419 0.15 +0.5 607,493 + ABIE53_004419 0.20 -0.3 607,494 - ABIE53_004419 0.20 +0.5 607,495 + ABIE53_004419 0.20 +1.4 607,495 + ABIE53_004419 0.20 +1.3 607,507 + ABIE53_004419 0.21 +4.1 607,507 + ABIE53_004419 0.21 +1.2 607,507 + ABIE53_004419 0.21 +0.4 607,508 - ABIE53_004419 0.21 +1.0 607,578 + ABIE53_004419 0.29 +1.4 607,578 + ABIE53_004419 0.29 +0.5 607,578 + ABIE53_004419 0.29 -0.5 607,579 - ABIE53_004419 0.29 +0.5 607,579 - ABIE53_004419 0.29 +0.1 607,612 - ABIE53_004419 0.32 -0.2 607,795 + ABIE53_004419 0.51 +0.4 607,795 + ABIE53_004419 0.51 -0.0 607,796 - ABIE53_004419 0.51 +0.8 607,796 - ABIE53_004419 0.51 +1.4 608,093 - ABIE53_004419 0.82 +0.1 608,093 - ABIE53_004419 0.82 +1.3 608,534 + ABIE53_004420 0.13 -0.5 608,534 + ABIE53_004420 0.13 +0.5 608,534 + ABIE53_004420 0.13 -1.4 608,534 + ABIE53_004420 0.13 +0.6 608,534 + ABIE53_004420 0.13 -0.2 608,534 + ABIE53_004420 0.13 -0.4 608,534 + ABIE53_004420 0.13 -0.2 608,535 - ABIE53_004420 0.13 -1.2 608,535 - ABIE53_004420 0.13 -2.0 608,535 - ABIE53_004420 0.13 -1.9 608,592 - ABIE53_004420 0.17 -2.3 608,592 - ABIE53_004420 0.17 -3.5 608,617 + ABIE53_004420 0.19 -1.8 608,618 - ABIE53_004420 0.19 -1.3 608,618 - ABIE53_004420 0.19 -0.8 608,623 + ABIE53_004420 0.20 +0.1 608,623 + ABIE53_004420 0.20 -0.1 608,624 - ABIE53_004420 0.20 -1.3 608,624 - ABIE53_004420 0.20 -2.7 608,652 + ABIE53_004420 0.22 +0.1 608,660 + ABIE53_004420 0.22 -0.3 608,660 + ABIE53_004420 0.22 +1.1 608,661 - ABIE53_004420 0.23 -1.3 608,740 + ABIE53_004420 0.28 -0.0 608,768 + ABIE53_004420 0.30 -0.1 608,768 + ABIE53_004420 0.30 -0.0 608,819 + ABIE53_004420 0.34 -0.8 608,962 - ABIE53_004420 0.45 -1.9 609,091 - ABIE53_004420 0.55 -0.3 609,091 - ABIE53_004420 0.55 -0.8 609,109 - ABIE53_004420 0.56 +1.0 609,159 - ABIE53_004420 0.60 +0.1 609,184 - ABIE53_004420 0.62 -0.8 609,184 - ABIE53_004420 0.62 -1.0 609,190 + ABIE53_004420 0.62 +0.3 609,190 + ABIE53_004420 0.62 +1.5 609,190 + ABIE53_004420 0.62 -0.8 609,190 + ABIE53_004420 0.62 +1.2 609,190 + ABIE53_004420 0.62 -0.7 609,191 - ABIE53_004420 0.62 -2.8 609,191 - ABIE53_004420 0.62 +1.5 609,191 - ABIE53_004420 0.62 -2.8 609,191 - ABIE53_004420 0.62 +1.5 609,705 + -0.3 609,740 + +0.7 609,822 + +0.4 609,822 + -1.0 609,822 + -1.6 609,823 - -2.0 609,861 + -0.2 609,861 + +0.2 609,861 + -0.2 609,861 + -0.3 609,862 - -0.8 609,862 - -0.8 609,862 - -1.9 609,867 + +1.0 609,867 + -0.1 609,867 + -1.1 609,867 + -0.6 610,035 + ABIE53_004421 0.30 +0.2 610,035 + ABIE53_004421 0.30 -1.4 610,035 + ABIE53_004421 0.30 +0.9 610,036 - ABIE53_004421 0.30 +0.6 610,036 - ABIE53_004421 0.30 -1.9 610,036 - ABIE53_004421 0.30 -2.9 610,145 + ABIE53_004421 0.48 +0.1 610,145 + ABIE53_004421 0.48 +0.2 610,145 + ABIE53_004421 0.48 -1.6 610,145 + ABIE53_004421 0.48 -2.3 610,145 + ABIE53_004421 0.48 -0.7 610,145 + ABIE53_004421 0.48 +0.3 610,145 + ABIE53_004421 0.48 -0.3 610,145 + ABIE53_004421 0.48 -0.8 610,146 - ABIE53_004421 0.48 -1.6 610,146 - ABIE53_004421 0.48 -0.9 610,146 - ABIE53_004421 0.48 -0.0 610,149 + ABIE53_004421 0.49 +0.4 610,149 + ABIE53_004421 0.49 +0.3 610,149 + ABIE53_004421 0.49 -1.4 610,149 + ABIE53_004421 0.49 -0.0 610,150 - ABIE53_004421 0.49 +1.6 610,150 - ABIE53_004421 0.49 -0.0 610,150 - ABIE53_004421 0.49 -2.8 610,150 - ABIE53_004421 0.49 -2.5 610,255 + ABIE53_004421 0.66 +1.4 610,255 + ABIE53_004421 0.66 -0.7 610,255 + ABIE53_004421 0.66 -0.4 610,313 - ABIE53_004421 0.76 -0.8 610,313 - ABIE53_004421 0.76 -0.9 610,386 - ABIE53_004421 0.88 -0.3 610,486 + +1.1 610,487 - -0.6 610,487 - +1.1 610,487 - +1.6 610,565 + +0.6 610,565 + -1.8 610,566 - -1.1 610,566 - +0.3 610,566 - -1.0 610,566 - -0.3 610,566 - -0.4
Or see this region's nucleotide sequence