Experiment: RCH2_defined_glucose_5mM with caffeic 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000417 and ABIE53_000418 are separated by 542 nucleotides ABIE53_000418 and ABIE53_000419 are separated by 112 nucleotides
ABIE53_000417: ABIE53_000417 - acetylglutamate kinase, at 450,701 to 451,600
_000417
ABIE53_000418: ABIE53_000418 - Flp pilus assembly protein TadD, at 452,143 to 453,771
_000418
ABIE53_000419: ABIE53_000419 - two-component system sensor histidine kinase RegB, at 453,884 to 455,194
_000419
Position (kb) 452
453
454 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 451.628 kb on - strand at 451.628 kb on - strand at 451.645 kb on - strand at 451.645 kb on - strand at 451.715 kb on + strand at 451.715 kb on + strand at 451.715 kb on + strand at 451.716 kb on - strand at 451.716 kb on - strand at 451.756 kb on - strand at 451.783 kb on - strand at 451.783 kb on - strand at 451.783 kb on - strand at 451.805 kb on - strand at 452.097 kb on + strand at 452.097 kb on + strand at 452.097 kb on + strand at 452.098 kb on - strand at 452.098 kb on - strand at 452.137 kb on + strand at 452.137 kb on + strand at 452.137 kb on + strand at 452.138 kb on - strand at 452.138 kb on - strand at 452.138 kb on - strand at 452.145 kb on - strand at 452.145 kb on - strand at 452.153 kb on - strand at 452.153 kb on - strand at 452.240 kb on + strand at 452.241 kb on - strand at 452.259 kb on - strand at 452.373 kb on + strand, within ABIE53_000418 at 452.438 kb on + strand, within ABIE53_000418 at 452.438 kb on + strand, within ABIE53_000418 at 452.438 kb on + strand, within ABIE53_000418 at 452.438 kb on + strand, within ABIE53_000418 at 452.439 kb on - strand, within ABIE53_000418 at 452.439 kb on - strand, within ABIE53_000418 at 452.439 kb on - strand, within ABIE53_000418 at 452.439 kb on - strand, within ABIE53_000418 at 452.507 kb on + strand, within ABIE53_000418 at 452.507 kb on + strand, within ABIE53_000418 at 452.507 kb on + strand, within ABIE53_000418 at 452.507 kb on + strand, within ABIE53_000418 at 452.508 kb on + strand, within ABIE53_000418 at 452.508 kb on - strand, within ABIE53_000418 at 452.546 kb on + strand, within ABIE53_000418 at 452.546 kb on + strand, within ABIE53_000418 at 452.547 kb on - strand, within ABIE53_000418 at 452.547 kb on - strand, within ABIE53_000418 at 452.684 kb on + strand, within ABIE53_000418 at 452.684 kb on + strand, within ABIE53_000418 at 452.684 kb on + strand, within ABIE53_000418 at 452.684 kb on + strand, within ABIE53_000418 at 452.684 kb on + strand, within ABIE53_000418 at 452.684 kb on + strand, within ABIE53_000418 at 452.685 kb on - strand, within ABIE53_000418 at 452.685 kb on - strand, within ABIE53_000418 at 452.685 kb on - strand, within ABIE53_000418 at 452.685 kb on - strand, within ABIE53_000418 at 452.891 kb on + strand, within ABIE53_000418 at 452.891 kb on + strand, within ABIE53_000418 at 452.891 kb on + strand, within ABIE53_000418 at 452.891 kb on + strand, within ABIE53_000418 at 452.891 kb on + strand, within ABIE53_000418 at 452.892 kb on - strand, within ABIE53_000418 at 452.892 kb on - strand, within ABIE53_000418 at 452.892 kb on - strand, within ABIE53_000418 at 452.892 kb on - strand, within ABIE53_000418 at 452.912 kb on + strand, within ABIE53_000418 at 452.913 kb on - strand, within ABIE53_000418 at 452.913 kb on - strand, within ABIE53_000418 at 452.913 kb on - strand, within ABIE53_000418 at 452.913 kb on - strand, within ABIE53_000418 at 452.956 kb on + strand, within ABIE53_000418 at 452.957 kb on - strand, within ABIE53_000418 at 453.212 kb on + strand, within ABIE53_000418 at 453.212 kb on + strand, within ABIE53_000418 at 453.212 kb on + strand, within ABIE53_000418 at 453.212 kb on + strand, within ABIE53_000418 at 453.212 kb on + strand, within ABIE53_000418 at 453.212 kb on + strand, within ABIE53_000418 at 453.212 kb on + strand, within ABIE53_000418 at 453.212 kb on + strand, within ABIE53_000418 at 453.212 kb on + strand, within ABIE53_000418 at 453.212 kb on + strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.213 kb on - strand, within ABIE53_000418 at 453.303 kb on - strand, within ABIE53_000418 at 453.430 kb on + strand, within ABIE53_000418 at 453.564 kb on + strand, within ABIE53_000418 at 453.564 kb on + strand, within ABIE53_000418 at 453.564 kb on + strand, within ABIE53_000418 at 453.565 kb on - strand, within ABIE53_000418 at 453.565 kb on - strand, within ABIE53_000418 at 453.565 kb on - strand, within ABIE53_000418 at 453.739 kb on - strand at 453.818 kb on + strand at 453.818 kb on + strand at 453.818 kb on + strand at 453.818 kb on + strand at 453.818 kb on + strand at 453.818 kb on + strand at 453.818 kb on + strand at 453.818 kb on + strand at 453.818 kb on + strand at 453.818 kb on + strand at 453.819 kb on - strand at 453.819 kb on - strand at 453.819 kb on - strand at 453.819 kb on - strand at 453.819 kb on - strand at 453.819 kb on - strand at 453.819 kb on - strand at 453.819 kb on - strand at 453.819 kb on - strand at 453.819 kb on - strand at 453.819 kb on - strand at 453.819 kb on - strand at 453.819 kb on - strand at 453.820 kb on + strand at 453.820 kb on + strand at 453.820 kb on + strand at 453.820 kb on + strand at 453.820 kb on + strand at 453.820 kb on + strand at 453.821 kb on - strand at 453.821 kb on - strand at 453.821 kb on - strand at 453.823 kb on + strand at 453.823 kb on + strand at 453.823 kb on + strand at 453.823 kb on + strand at 453.823 kb on + strand at 453.823 kb on + strand at 453.823 kb on + strand at 453.824 kb on - strand at 453.824 kb on - strand at 453.824 kb on - strand at 453.824 kb on - strand at 453.846 kb on - strand at 453.867 kb on + strand at 453.892 kb on + strand at 453.892 kb on + strand at 453.894 kb on + strand at 453.895 kb on - strand at 453.895 kb on - strand at 453.895 kb on - strand at 454.337 kb on + strand, within ABIE53_000419
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with caffeic 0.5 mM remove 451,628 - +0.2 451,628 - -1.6 451,645 - -0.8 451,645 - -1.1 451,715 + -1.6 451,715 + -0.1 451,715 + +0.3 451,716 - +2.3 451,716 - -1.2 451,756 - +0.9 451,783 - -2.5 451,783 - +0.6 451,783 - +2.3 451,805 - -0.9 452,097 + -2.2 452,097 + -0.7 452,097 + +0.3 452,098 - +1.8 452,098 - +0.2 452,137 + -2.4 452,137 + -0.3 452,137 + -0.6 452,138 - -2.1 452,138 - +0.6 452,138 - -1.1 452,145 - -1.1 452,145 - -1.4 452,153 - +0.1 452,153 - -2.4 452,240 + +0.8 452,241 - +0.8 452,259 - +1.2 452,373 + ABIE53_000418 0.14 +3.1 452,438 + ABIE53_000418 0.18 -0.6 452,438 + ABIE53_000418 0.18 +1.6 452,438 + ABIE53_000418 0.18 +0.6 452,438 + ABIE53_000418 0.18 +2.8 452,439 - ABIE53_000418 0.18 -0.2 452,439 - ABIE53_000418 0.18 +0.2 452,439 - ABIE53_000418 0.18 +2.8 452,439 - ABIE53_000418 0.18 -0.6 452,507 + ABIE53_000418 0.22 +0.3 452,507 + ABIE53_000418 0.22 -1.7 452,507 + ABIE53_000418 0.22 +0.1 452,507 + ABIE53_000418 0.22 -0.2 452,508 + ABIE53_000418 0.22 -0.9 452,508 - ABIE53_000418 0.22 -0.4 452,546 + ABIE53_000418 0.25 -1.0 452,546 + ABIE53_000418 0.25 +3.3 452,547 - ABIE53_000418 0.25 +1.8 452,547 - ABIE53_000418 0.25 -0.2 452,684 + ABIE53_000418 0.33 -0.3 452,684 + ABIE53_000418 0.33 +0.6 452,684 + ABIE53_000418 0.33 -0.5 452,684 + ABIE53_000418 0.33 +1.1 452,684 + ABIE53_000418 0.33 -0.5 452,684 + ABIE53_000418 0.33 -0.2 452,685 - ABIE53_000418 0.33 -0.2 452,685 - ABIE53_000418 0.33 +1.6 452,685 - ABIE53_000418 0.33 +0.3 452,685 - ABIE53_000418 0.33 +2.8 452,891 + ABIE53_000418 0.46 -0.0 452,891 + ABIE53_000418 0.46 +0.8 452,891 + ABIE53_000418 0.46 -1.2 452,891 + ABIE53_000418 0.46 +0.3 452,891 + ABIE53_000418 0.46 -0.2 452,892 - ABIE53_000418 0.46 +0.4 452,892 - ABIE53_000418 0.46 -0.6 452,892 - ABIE53_000418 0.46 +0.7 452,892 - ABIE53_000418 0.46 -0.8 452,912 + ABIE53_000418 0.47 -0.1 452,913 - ABIE53_000418 0.47 -0.3 452,913 - ABIE53_000418 0.47 +1.2 452,913 - ABIE53_000418 0.47 -1.9 452,913 - ABIE53_000418 0.47 -0.7 452,956 + ABIE53_000418 0.50 -2.1 452,957 - ABIE53_000418 0.50 +0.2 453,212 + ABIE53_000418 0.66 -1.7 453,212 + ABIE53_000418 0.66 -0.6 453,212 + ABIE53_000418 0.66 +1.5 453,212 + ABIE53_000418 0.66 -2.2 453,212 + ABIE53_000418 0.66 +0.5 453,212 + ABIE53_000418 0.66 -0.6 453,212 + ABIE53_000418 0.66 -3.4 453,212 + ABIE53_000418 0.66 +0.2 453,212 + ABIE53_000418 0.66 -1.1 453,212 + ABIE53_000418 0.66 +1.8 453,213 - ABIE53_000418 0.66 -1.8 453,213 - ABIE53_000418 0.66 +1.0 453,213 - ABIE53_000418 0.66 -0.2 453,213 - ABIE53_000418 0.66 -0.1 453,213 - ABIE53_000418 0.66 -0.7 453,213 - ABIE53_000418 0.66 -0.2 453,213 - ABIE53_000418 0.66 -0.1 453,213 - ABIE53_000418 0.66 +1.2 453,213 - ABIE53_000418 0.66 +0.2 453,213 - ABIE53_000418 0.66 +0.4 453,213 - ABIE53_000418 0.66 -1.1 453,213 - ABIE53_000418 0.66 +0.8 453,213 - ABIE53_000418 0.66 -0.7 453,213 - ABIE53_000418 0.66 -0.1 453,213 - ABIE53_000418 0.66 +0.8 453,213 - ABIE53_000418 0.66 +2.3 453,213 - ABIE53_000418 0.66 -0.1 453,213 - ABIE53_000418 0.66 +0.2 453,213 - ABIE53_000418 0.66 +0.5 453,213 - ABIE53_000418 0.66 -1.9 453,213 - ABIE53_000418 0.66 -1.2 453,303 - ABIE53_000418 0.71 +0.5 453,430 + ABIE53_000418 0.79 +1.1 453,564 + ABIE53_000418 0.87 +0.9 453,564 + ABIE53_000418 0.87 +0.3 453,564 + ABIE53_000418 0.87 +0.3 453,565 - ABIE53_000418 0.87 +0.8 453,565 - ABIE53_000418 0.87 +0.6 453,565 - ABIE53_000418 0.87 -0.6 453,739 - +0.8 453,818 + +0.4 453,818 + +0.2 453,818 + -0.2 453,818 + -0.4 453,818 + +0.8 453,818 + -0.7 453,818 + +0.4 453,818 + -0.4 453,818 + +0.5 453,818 + +0.5 453,819 - -0.9 453,819 - -0.3 453,819 - +0.0 453,819 - -2.6 453,819 - +0.2 453,819 - -1.7 453,819 - -0.7 453,819 - +3.6 453,819 - -0.4 453,819 - -1.6 453,819 - +0.8 453,819 - +0.8 453,819 - +2.2 453,820 + +0.2 453,820 + -2.1 453,820 + +1.8 453,820 + +1.8 453,820 + +1.2 453,820 + -0.8 453,821 - -0.6 453,821 - +1.2 453,821 - -1.6 453,823 + -0.3 453,823 + +1.2 453,823 + +0.1 453,823 + -0.6 453,823 + +2.2 453,823 + +0.2 453,823 + +1.2 453,824 - -0.1 453,824 - +1.0 453,824 - -1.8 453,824 - -0.2 453,846 - -0.1 453,867 + +0.7 453,892 + +2.1 453,892 + +2.1 453,894 + -2.6 453,895 - +1.4 453,895 - +1.0 453,895 - +0.4 454,337 + ABIE53_000419 0.35 +2.6
Or see this region's nucleotide sequence