Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3839

Experiment: Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml
4,993,918	+				+1.5
4,993,918	+				-2.3
4,993,950	-				+2.3
4,993,950	-				+2.8
4,993,950	-				+1.7
4,993,951	+				-0.3
4,993,990	+				+1.9
4,994,194	+		BT3838	0.37	+1.3
4,994,459	-		BT3838	0.73	+3.6
4,994,553	+		BT3838	0.85	+4.4
4,994,588	-				+2.0
4,994,716	-				+4.5
4,994,836	+		BT3839	0.23	+2.1
4,995,179	+		BT3839	0.67	+1.7
4,995,220	-		BT3839	0.73	+3.2
4,995,304	-		BT3839	0.84	-0.3
4,995,391	-				+1.1
4,995,417	+				-0.2
4,995,417	+				-0.5
4,995,418	-				+1.6
4,995,418	-				+0.4
4,995,418	-				+0.9
4,995,442	+				-0.2
4,995,442	+				-0.8
4,995,453	-				-0.1
4,995,520	-				-2.1
4,995,545	+		BT3840	0.11	+0.2
4,995,545	+		BT3840	0.11	-0.9
4,995,554	-		BT3840	0.15	-1.0
4,995,669	-		BT3840	0.61	-1.6
4,995,735	+		BT3840	0.88	+0.3
4,995,784	-				-1.4
4,995,821	-				-0.2
4,995,823	+				-1.1
4,995,824	-				-0.5
4,996,042	-				-0.7
4,996,042	-				-1.4
4,996,193	+				+2.1
4,996,206	+				-1.2