Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1682

Experiment: Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml
2,072,964	+				-1.1
2,072,992	+				-0.5
2,072,993	-				-1.7
2,073,077	-				-0.9
2,073,078	-				-2.2
2,073,137	-				-1.7
2,073,150	+				-1.3
2,073,173	+				+1.2
2,073,206	+				+0.4
2,073,409	+		BT1681	0.44	-1.2
2,073,447	-		BT1681	0.51	-3.5
2,073,447	-		BT1681	0.51	-0.4
2,073,461	+		BT1681	0.54	+1.2
2,073,582	-		BT1681	0.76	-2.5
2,073,604	+		BT1681	0.80	+0.5
2,073,636	+		BT1681	0.86	-1.1
2,073,649	+		BT1681	0.88	+0.9
2,073,651	+		BT1681	0.89	-1.0
2,073,652	-		BT1681	0.89	-0.3
2,073,658	+				-1.2
2,073,658	+				+0.5
2,073,718	+				+0.1
2,073,719	-				-2.3
2,073,751	-				-0.4
2,073,818	-				-2.4
2,073,900	+				+0.3
2,073,904	-				-0.6
2,073,959	-				+0.1
2,074,012	+				+0.4
2,074,013	-				-0.1
2,074,045	+				-2.9
2,074,046	-				-1.0
2,074,171	+		BT1682	0.14	+1.1
2,074,175	-		BT1682	0.14	-0.7
2,074,176	+		BT1682	0.14	-0.7
2,074,205	+		BT1682	0.16	+1.4
2,074,206	-		BT1682	0.16	+0.9
2,074,231	-		BT1682	0.17	+2.0
2,074,337	-		BT1682	0.22	-2.0
2,074,374	+		BT1682	0.24	-2.2
2,074,480	-		BT1682	0.30	-0.5
2,074,480	-		BT1682	0.30	-0.3
2,074,538	-		BT1682	0.33	-0.4
2,074,538	-		BT1682	0.33	-3.6
2,074,607	-		BT1682	0.36	-2.4
2,074,607	-		BT1682	0.36	+0.7
2,074,658	-		BT1682	0.39	-1.2
2,074,661	+		BT1682	0.39	+0.0
2,074,662	-		BT1682	0.39	-0.6
2,074,662	-		BT1682	0.39	-0.0
2,074,663	+		BT1682	0.39	+0.9
2,074,664	-		BT1682	0.39	-0.7
2,074,666	+		BT1682	0.39	-0.5
2,074,688	-		BT1682	0.40	+0.2
2,074,690	+		BT1682	0.40	-0.5
2,074,735	-		BT1682	0.43	-1.2
2,074,767	+		BT1682	0.44	-1.3
2,074,768	-		BT1682	0.44	-1.6
2,074,787	-		BT1682	0.45	+0.5
2,074,862	-		BT1682	0.49	+1.1
2,074,905	-		BT1682	0.51	-1.3
2,074,921	+		BT1682	0.52	-0.6
2,074,924	-		BT1682	0.52	-0.8
2,074,975	+		BT1682	0.55	-1.9
2,074,986	+		BT1682	0.56	-0.3
2,075,042	-		BT1682	0.58	-1.1
2,075,042	-		BT1682	0.58	-1.0
2,075,064	-		BT1682	0.60	+2.3
2,075,089	-		BT1682	0.61	+0.0
2,075,114	-		BT1682	0.62	-1.2
2,075,136	+		BT1682	0.63	-2.1
2,075,194	+		BT1682	0.66	+1.4
2,075,199	+		BT1682	0.66	-1.5
2,075,200	-		BT1682	0.67	-0.7
2,075,250	+		BT1682	0.69	+0.1
2,075,250	+		BT1682	0.69	-1.0
2,075,251	-		BT1682	0.69	-0.5
2,075,251	-		BT1682	0.69	-1.6
2,075,279	+		BT1682	0.71	-0.3
2,075,330	-		BT1682	0.73	-1.6
2,075,418	+		BT1682	0.78	-0.9
2,075,418	+		BT1682	0.78	-2.2
2,075,424	+		BT1682	0.78	-0.9
2,075,425	-		BT1682	0.78	-0.6
2,075,512	+		BT1682	0.82	+2.3
2,075,525	-		BT1682	0.83	-2.6
2,075,532	+		BT1682	0.83	+0.7
2,075,532	+		BT1682	0.83	+0.3
2,075,533	-		BT1682	0.84	-1.3
2,075,551	+		BT1682	0.84	-1.9
2,075,563	+		BT1682	0.85	-2.4
2,075,587	-		BT1682	0.86	+1.8
2,075,590	+		BT1682	0.86	+0.2
2,075,595	+		BT1682	0.87	-0.5
2,075,680	-				+1.0
2,075,703	+				-0.3
2,075,725	+				-0.7
2,075,725	+				-0.5
2,075,740	+				-0.3
2,075,741	-				-0.0
2,075,741	-				-1.0
2,075,839	+				+0.7
2,075,840	-				+0.9
2,075,840	-				-1.4
2,075,841	+				+0.1
2,075,843	+				+0.7
2,075,844	-				-0.9
2,075,973	+				+1.3
2,076,030	+				-1.4
2,076,030	+				+1.2
2,076,048	+				-0.6
2,076,049	-				-0.1
2,076,095	+				-1.5
2,076,099	-				+0.7
2,076,099	-				+0.3
2,076,147	+				-0.5
2,076,191	+		BT1683	0.10	-0.6
2,076,191	+		BT1683	0.10	-0.1
2,076,213	+		BT1683	0.11	+0.1
2,076,236	+		BT1683	0.12	+0.4
2,076,258	-		BT1683	0.12	-1.2
2,076,324	+		BT1683	0.14	-1.5
2,076,331	-		BT1683	0.15	-1.2
2,076,357	+		BT1683	0.15	+0.0
2,076,381	-		BT1683	0.16	+0.4
2,076,414	+		BT1683	0.17	-2.3
2,076,446	+		BT1683	0.18	-0.2
2,076,449	+		BT1683	0.18	-1.9
2,076,449	+		BT1683	0.18	-0.0
2,076,481	+		BT1683	0.19	-0.3
2,076,492	+		BT1683	0.20	-0.1
2,076,564	+		BT1683	0.22	+0.4
2,076,735	+		BT1683	0.27	-0.9
2,076,795	+		BT1683	0.29	-0.6
2,076,822	+		BT1683	0.30	-0.6
2,076,822	+		BT1683	0.30	+1.5