Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1633

Experiment: Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml
2,018,358	-		BT1632	0.56	-1.3
2,018,384	+		BT1632	0.58	-0.6
2,018,400	-		BT1632	0.59	+0.7
2,018,400	-		BT1632	0.59	-0.6
2,018,408	+		BT1632	0.59	-1.0
2,018,418	+		BT1632	0.60	-0.4
2,018,441	-		BT1632	0.61	-0.6
2,018,455	+		BT1632	0.62	-0.4
2,018,456	-		BT1632	0.62	-1.3
2,018,456	-		BT1632	0.62	-0.9
2,018,621	-		BT1632	0.72	+1.1
2,018,621	-		BT1632	0.72	-1.6
2,018,622	+		BT1632	0.72	+0.5
2,018,623	-		BT1632	0.72	-2.1
2,018,623	-		BT1632	0.72	+0.3
2,018,623	-		BT1632	0.72	-0.3
2,018,624	+		BT1632	0.72	-0.1
2,018,624	+		BT1632	0.72	-1.3
2,018,624	+		BT1632	0.72	-2.2
2,018,625	-		BT1632	0.72	+1.7
2,018,625	-		BT1632	0.72	+1.9
2,018,626	+		BT1632	0.72	-0.2
2,018,626	+		BT1632	0.72	+1.8
2,018,765	+		BT1632	0.80	-0.5
2,018,815	+		BT1632	0.83	-0.8
2,018,903	+		BT1632	0.89	+0.7
2,018,903	+		BT1632	0.89	-0.4
2,018,918	+		BT1632	0.90	-2.3
2,019,000	-				+0.5
2,019,090	-				+0.7
2,019,164	+				-0.5
2,019,232	+				-0.9
2,019,261	-				-1.5
2,019,336	-				-1.4
2,019,490	-		BT1633	0.19	+1.1
2,019,580	-		BT1633	0.31	+1.4
2,019,743	+		BT1633	0.53	+0.5
2,019,743	+		BT1633	0.53	+0.2
2,019,880	-		BT1633	0.71	-0.1
2,019,924	+		BT1633	0.77	+2.7
2,019,938	-		BT1633	0.79	+3.7
2,019,948	+		BT1633	0.80	+0.0
2,019,949	-		BT1633	0.80	+3.1
2,019,959	-		BT1633	0.82	+0.4
2,020,091	-				-1.6
2,020,124	+				-0.1
2,020,134	-				+0.3
2,020,260	-		BT1634	0.11	+0.7
2,020,277	+		BT1634	0.12	-0.9
2,020,277	+		BT1634	0.12	-1.3
2,020,278	-		BT1634	0.12	-1.4
2,020,280	-		BT1634	0.12	-0.4
2,020,299	+		BT1634	0.14	-0.3
2,020,299	+		BT1634	0.14	-2.5
2,020,299	+		BT1634	0.14	+1.0
2,020,310	-		BT1634	0.14	+0.1
2,020,394	-		BT1634	0.20	+1.7
2,020,403	-		BT1634	0.21	-0.5
2,020,415	+		BT1634	0.22	-2.1
2,020,442	-		BT1634	0.24	+0.2
2,020,485	-		BT1634	0.27	-0.5
2,020,583	-		BT1634	0.33	-0.6
2,020,598	-		BT1634	0.35	+0.2
2,020,751	-		BT1634	0.45	+2.7
2,020,791	-		BT1634	0.48	-2.1
2,020,792	+		BT1634	0.48	-0.6
2,020,821	-		BT1634	0.50	-2.2
2,020,867	+		BT1634	0.53	-0.2
2,021,065	+		BT1634	0.67	-1.5
2,021,071	+		BT1634	0.68	-3.1