Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1444

Experiment: Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml
1,778,048	+		BT1443	0.14	-3.1
1,778,049	-		BT1443	0.14	-1.9
1,778,166	+		BT1443	0.25	-1.6
1,778,207	-		BT1443	0.28	-1.9
1,778,225	+		BT1443	0.30	-2.6
1,778,250	+		BT1443	0.32	-1.3
1,778,277	-		BT1443	0.34	-3.1
1,778,306	+		BT1443	0.37	-2.5
1,778,386	+		BT1443	0.44	-0.7
1,778,460	-		BT1443	0.50	-1.8
1,778,541	-		BT1443	0.57	-2.6
1,778,626	+		BT1443	0.64	-2.9
1,778,627	-		BT1443	0.65	-0.4
1,778,627	-		BT1443	0.65	-0.6
1,778,683	-		BT1443	0.69	-3.6
1,778,800	+		BT1443	0.79	-2.4
1,778,821	+		BT1443	0.81	-2.7
1,778,824	-		BT1443	0.82	-1.8
1,778,824	-		BT1443	0.82	-1.3
1,778,824	-		BT1443	0.82	-0.9
1,778,917	+		BT1443	0.90	-3.2
1,778,918	-		BT1443	0.90	-1.3
1,779,017	+				+0.4
1,779,122	+		BT1444	0.13	-2.8
1,779,190	+		BT1444	0.24	-1.7
1,779,392	-		BT1444	0.54	-2.6
1,779,451	+		BT1444	0.63	-3.7
1,779,686	+				-1.1
1,779,708	+				+1.9
1,779,708	+				-2.5
1,779,923	+		BT1445	0.28	-2.9
1,779,941	-		BT1445	0.30	-1.7
1,779,956	+		BT1445	0.32	-1.9
1,780,024	-		BT1445	0.41	-0.9
1,780,032	+		BT1445	0.42	-0.1
1,780,033	-		BT1445	0.42	-0.9
1,780,033	-		BT1445	0.42	-2.7
1,780,092	+		BT1445	0.49	-1.4
1,780,093	-		BT1445	0.50	-1.6
1,780,187	-		BT1445	0.62	-1.4
1,780,234	-		BT1445	0.68	-2.5
1,780,234	-		BT1445	0.68	-3.0
1,780,235	+		BT1445	0.68	-3.3
1,780,447	+				-2.4
1,780,448	-				-2.5
1,780,448	-				-3.6
1,780,448	-				+0.6
1,780,460	-				-4.9
1,780,460	-				-2.0
1,780,467	-				-3.0
1,780,467	-				-1.7
1,780,485	-				-1.3
1,780,639	+		BT1446	0.24	-3.7
1,780,639	+		BT1446	0.24	-2.5
1,780,640	-		BT1446	0.24	-2.4
1,780,640	-		BT1446	0.24	-2.6