Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0001

Experiment: Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0001 and BT0002 are separated by 72 nucleotides BT0001: BT0001 - conserved hypothetical protein (NCBI ptt file), at 93 to 710 BT0001 BT0002: BT0002 - hypothetical protein (NCBI ptt file), at 783 to 1,778 BT0002 Position (kb) 0 1Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 0.001 kb on + strandat 0.037 kb on - strandat 0.040 kb on - strandat 0.080 kb on - strandat 0.080 kb on - strandat 0.098 kb on - strandat 0.101 kb on + strandat 0.176 kb on - strand, within BT0001at 0.186 kb on - strand, within BT0001at 0.189 kb on - strand, within BT0001at 0.195 kb on + strand, within BT0001at 0.200 kb on + strand, within BT0001at 0.215 kb on + strand, within BT0001at 0.215 kb on + strand, within BT0001at 0.215 kb on + strand, within BT0001at 0.283 kb on + strand, within BT0001at 0.339 kb on - strand, within BT0001at 0.398 kb on + strand, within BT0001at 0.398 kb on + strand, within BT0001at 0.399 kb on - strand, within BT0001at 0.412 kb on - strand, within BT0001at 0.447 kb on + strand, within BT0001at 0.479 kb on + strand, within BT0001at 0.479 kb on + strand, within BT0001at 0.570 kb on + strand, within BT0001at 0.865 kb on + strandat 0.887 kb on + strand, within BT0002at 0.914 kb on - strand, within BT0002at 0.921 kb on - strand, within BT0002at 0.987 kb on - strand, within BT0002at 1.007 kb on + strand, within BT0002at 1.058 kb on + strand, within BT0002at 1.061 kb on + strand, within BT0002at 1.062 kb on - strand, within BT0002at 1.097 kb on + strand, within BT0002at 1.098 kb on - strand, within BT0002at 1.127 kb on + strand, within BT0002at 1.144 kb on + strand, within BT0002at 1.145 kb on - strand, within BT0002at 1.145 kb on - strand, within BT0002at 1.148 kb on + strand, within BT0002at 1.163 kb on + strand, within BT0002at 1.164 kb on - strand, within BT0002at 1.167 kb on - strand, within BT0002at 1.174 kb on + strand, within BT0002at 1.177 kb on - strand, within BT0002at 1.179 kb on - strand, within BT0002at 1.181 kb on - strand, within BT0002at 1.185 kb on - strand, within BT0002at 1.224 kb on + strand, within BT0002at 1.225 kb on - strand, within BT0002at 1.291 kb on - strand, within BT0002at 1.307 kb on + strand, within BT0002at 1.310 kb on + strand, within BT0002at 1.427 kb on + strand, within BT0002at 1.494 kb on - strand, within BT0002at 1.553 kb on + strand, within BT0002at 1.554 kb on - strand, within BT0002at 1.588 kb on + strand, within BT0002at 1.589 kb on - strand, within BT0002at 1.589 kb on - strand, within BT0002at 1.601 kb on - strand, within BT0002at 1.601 kb on - strand, within BT0002at 1.690 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml
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1 + +0.1
37 - -0.4
40 - -0.7
80 - -0.1
80 - -0.6
98 - -0.5
101 + -2.6
176 - BT0001 0.13 -1.7
186 - BT0001 0.15 +1.0
189 - BT0001 0.16 +1.1
195 + BT0001 0.17 +0.3
200 + BT0001 0.17 -1.5
215 + BT0001 0.20 -0.3
215 + BT0001 0.20 +0.6
215 + BT0001 0.20 +0.7
283 + BT0001 0.31 -0.6
339 - BT0001 0.40 +1.1
398 + BT0001 0.49 +0.3
398 + BT0001 0.49 -1.1
399 - BT0001 0.50 +0.4
412 - BT0001 0.52 -1.0
447 + BT0001 0.57 +0.2
479 + BT0001 0.62 +0.4
479 + BT0001 0.62 -1.0
570 + BT0001 0.77 +0.0
865 + -0.9
887 + BT0002 0.10 +0.1
914 - BT0002 0.13 -1.8
921 - BT0002 0.14 +0.6
987 - BT0002 0.20 +0.5
1,007 + BT0002 0.22 -0.2
1,058 + BT0002 0.28 +0.5
1,061 + BT0002 0.28 -0.0
1,062 - BT0002 0.28 -3.5
1,097 + BT0002 0.32 -1.0
1,098 - BT0002 0.32 -0.3
1,127 + BT0002 0.35 -0.4
1,144 + BT0002 0.36 +2.3
1,145 - BT0002 0.36 +1.4
1,145 - BT0002 0.36 -2.1
1,148 + BT0002 0.37 -1.8
1,163 + BT0002 0.38 +0.7
1,164 - BT0002 0.38 +0.3
1,167 - BT0002 0.39 -1.3
1,174 + BT0002 0.39 -0.3
1,177 - BT0002 0.40 -2.0
1,179 - BT0002 0.40 -0.5
1,181 - BT0002 0.40 -0.5
1,185 - BT0002 0.40 +0.7
1,224 + BT0002 0.44 -0.6
1,225 - BT0002 0.44 -0.4
1,291 - BT0002 0.51 -0.7
1,307 + BT0002 0.53 -0.1
1,310 + BT0002 0.53 +0.1
1,427 + BT0002 0.65 +0.2
1,494 - BT0002 0.71 -1.0
1,553 + BT0002 0.77 +1.4
1,554 - BT0002 0.77 -0.9
1,588 + BT0002 0.81 -0.6
1,589 - BT0002 0.81 +1.2
1,589 - BT0002 0.81 +0.8
1,601 - BT0002 0.82 +0.5
1,601 - BT0002 0.82 +0.5
1,690 + -2.8

Or see this region's nucleotide sequence