Strain Fitness in Shewanella oneidensis MR-1 around SO4679

Experiment: Survival in PBS at 22C, experiment2, 13 day

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO4678 and SO4679 are separated by 52 nucleotidesSO4679 and SO4680 are separated by 19 nucleotides SO4678: SO4678 - heptosyl transferase, glycosyltransferase family 9 protein (NCBI ptt file), at 4,876,548 to 4,877,591 SO4678 SO4679: SO4679 - glycosyl transferase, group 1 family protein (NCBI ptt file), at 4,877,644 to 4,878,729 SO4679 SO4680: SO4680 - conserved hypothetical protein (NCBI ptt file), at 4,878,749 to 4,879,825 SO4680 Position (kb) 4877 4878 4879Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 4876.720 kb on + strand, within SO4678at 4876.790 kb on - strand, within SO4678at 4876.798 kb on + strand, within SO4678at 4876.948 kb on + strand, within SO4678at 4876.959 kb on - strand, within SO4678at 4877.023 kb on - strand, within SO4678at 4877.038 kb on - strand, within SO4678at 4877.060 kb on - strand, within SO4678at 4877.137 kb on - strand, within SO4678at 4877.165 kb on + strand, within SO4678at 4877.173 kb on - strand, within SO4678at 4877.173 kb on - strand, within SO4678at 4877.179 kb on + strand, within SO4678at 4877.187 kb on - strand, within SO4678at 4877.303 kb on + strand, within SO4678at 4877.366 kb on + strand, within SO4678at 4877.396 kb on + strand, within SO4678at 4877.404 kb on - strand, within SO4678at 4877.416 kb on + strand, within SO4678at 4877.424 kb on - strand, within SO4678at 4877.442 kb on - strand, within SO4678at 4877.457 kb on - strand, within SO4678at 4877.460 kb on + strand, within SO4678at 4877.467 kb on + strand, within SO4678at 4877.467 kb on + strand, within SO4678at 4877.544 kb on - strandat 4877.585 kb on + strandat 4877.585 kb on + strandat 4877.587 kb on + strandat 4877.595 kb on + strandat 4877.659 kb on + strandat 4877.667 kb on - strandat 4877.677 kb on - strandat 4877.677 kb on - strandat 4877.702 kb on - strandat 4877.732 kb on + strandat 4877.795 kb on - strand, within SO4679at 4878.131 kb on - strand, within SO4679at 4878.216 kb on - strand, within SO4679at 4878.299 kb on + strand, within SO4679at 4878.307 kb on - strand, within SO4679at 4878.331 kb on + strand, within SO4679at 4878.334 kb on - strand, within SO4679at 4878.334 kb on - strand, within SO4679at 4878.349 kb on - strand, within SO4679at 4878.520 kb on + strand, within SO4679at 4878.520 kb on + strand, within SO4679at 4878.525 kb on + strand, within SO4679at 4878.526 kb on - strand, within SO4679at 4878.594 kb on - strand, within SO4679at 4878.689 kb on - strandat 4878.794 kb on + strandat 4878.794 kb on + strandat 4878.794 kb on + strandat 4878.802 kb on - strandat 4878.802 kb on - strandat 4878.802 kb on - strandat 4879.019 kb on - strand, within SO4680at 4879.029 kb on + strand, within SO4680at 4879.097 kb on - strand, within SO4680at 4879.107 kb on - strand, within SO4680at 4879.129 kb on + strand, within SO4680at 4879.262 kb on - strand, within SO4680at 4879.286 kb on + strand, within SO4680at 4879.286 kb on + strand, within SO4680at 4879.294 kb on - strand, within SO4680at 4879.294 kb on - strand, within SO4680at 4879.294 kb on - strand, within SO4680at 4879.294 kb on - strand, within SO4680at 4879.294 kb on - strand, within SO4680at 4879.318 kb on + strand, within SO4680at 4879.326 kb on - strand, within SO4680at 4879.353 kb on + strand, within SO4680at 4879.353 kb on + strand, within SO4680at 4879.361 kb on - strand, within SO4680at 4879.361 kb on - strand, within SO4680at 4879.399 kb on + strand, within SO4680at 4879.407 kb on - strand, within SO4680at 4879.431 kb on - strand, within SO4680at 4879.473 kb on + strand, within SO4680at 4879.488 kb on - strand, within SO4680at 4879.491 kb on - strand, within SO4680at 4879.522 kb on + strand, within SO4680at 4879.522 kb on + strand, within SO4680at 4879.522 kb on + strand, within SO4680at 4879.522 kb on + strand, within SO4680at 4879.522 kb on + strand, within SO4680at 4879.530 kb on - strand, within SO4680at 4879.575 kb on + strand, within SO4680at 4879.619 kb on - strand, within SO4680

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival in PBS at 22C, experiment2, 13 day
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4,876,720 + SO4678 0.16 +4.8
4,876,790 - SO4678 0.23 +5.1
4,876,798 + SO4678 0.24 +3.9
4,876,948 + SO4678 0.38 +5.0
4,876,959 - SO4678 0.39 +4.5
4,877,023 - SO4678 0.45 +5.6
4,877,038 - SO4678 0.47 +4.5
4,877,060 - SO4678 0.49 -1.3
4,877,137 - SO4678 0.56 +3.5
4,877,165 + SO4678 0.59 +3.3
4,877,173 - SO4678 0.60 +4.4
4,877,173 - SO4678 0.60 +4.3
4,877,179 + SO4678 0.60 +3.9
4,877,187 - SO4678 0.61 +3.6
4,877,303 + SO4678 0.72 +4.1
4,877,366 + SO4678 0.78 +4.3
4,877,396 + SO4678 0.81 +3.2
4,877,404 - SO4678 0.82 +4.4
4,877,416 + SO4678 0.83 +5.3
4,877,424 - SO4678 0.84 +5.2
4,877,442 - SO4678 0.86 +4.9
4,877,457 - SO4678 0.87 +4.2
4,877,460 + SO4678 0.87 +4.4
4,877,467 + SO4678 0.88 +5.0
4,877,467 + SO4678 0.88 +4.1
4,877,544 - +5.4
4,877,585 + -2.4
4,877,585 + -0.4
4,877,587 + +0.5
4,877,595 + -1.0
4,877,659 + -2.3
4,877,667 - +3.8
4,877,677 - +3.6
4,877,677 - +4.6
4,877,702 - +3.7
4,877,732 + +2.6
4,877,795 - SO4679 0.14 +4.2
4,878,131 - SO4679 0.45 +4.8
4,878,216 - SO4679 0.53 +2.8
4,878,299 + SO4679 0.60 +1.0
4,878,307 - SO4679 0.61 +0.7
4,878,331 + SO4679 0.63 +3.6
4,878,334 - SO4679 0.64 +3.6
4,878,334 - SO4679 0.64 +3.5
4,878,349 - SO4679 0.65 +4.6
4,878,520 + SO4679 0.81 +1.9
4,878,520 + SO4679 0.81 +2.0
4,878,525 + SO4679 0.81 +0.8
4,878,526 - SO4679 0.81 +4.7
4,878,594 - SO4679 0.87 +5.3
4,878,689 - +4.5
4,878,794 + +5.3
4,878,794 + +5.7
4,878,794 + +3.7
4,878,802 - +4.7
4,878,802 - +3.5
4,878,802 - +5.5
4,879,019 - SO4680 0.25 +5.3
4,879,029 + SO4680 0.26 +5.5
4,879,097 - SO4680 0.32 +4.6
4,879,107 - SO4680 0.33 +4.9
4,879,129 + SO4680 0.35 +5.5
4,879,262 - SO4680 0.48 +4.6
4,879,286 + SO4680 0.50 +3.6
4,879,286 + SO4680 0.50 +5.3
4,879,294 - SO4680 0.51 +5.4
4,879,294 - SO4680 0.51 +5.2
4,879,294 - SO4680 0.51 +6.0
4,879,294 - SO4680 0.51 +4.9
4,879,294 - SO4680 0.51 +5.3
4,879,318 + SO4680 0.53 +6.0
4,879,326 - SO4680 0.54 +5.8
4,879,353 + SO4680 0.56 +4.8
4,879,353 + SO4680 0.56 +5.0
4,879,361 - SO4680 0.57 +4.8
4,879,361 - SO4680 0.57 +6.3
4,879,399 + SO4680 0.60 +6.2
4,879,407 - SO4680 0.61 +6.2
4,879,431 - SO4680 0.63 +3.1
4,879,473 + SO4680 0.67 +3.5
4,879,488 - SO4680 0.69 +4.4
4,879,491 - SO4680 0.69 +5.0
4,879,522 + SO4680 0.72 +5.3
4,879,522 + SO4680 0.72 +3.9
4,879,522 + SO4680 0.72 +6.5
4,879,522 + SO4680 0.72 +6.0
4,879,522 + SO4680 0.72 +4.6
4,879,530 - SO4680 0.73 +5.1
4,879,575 + SO4680 0.77 +6.0
4,879,619 - SO4680 0.81 +2.6

Or see this region's nucleotide sequence