Strain Fitness in Shewanella oneidensis MR-1 around SO3629

Experiment: Survival in PBS at 22C, experiment2, 13 day

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival in PBS at 22C, experiment2, 13 day
3,787,272	+		SO3627	0.78	-0.5
3,787,272	+		SO3627	0.78	+0.0
3,787,280	-		SO3627	0.79	+1.4
3,787,293	-		SO3627	0.80	+0.9
3,787,300	-		SO3627	0.81	+0.2
3,787,315	+		SO3627	0.83	-0.5
3,787,315	+		SO3627	0.83	+2.7
3,787,315	+		SO3627	0.83	+0.3
3,787,315	+		SO3627	0.83	-1.4
3,787,315	+		SO3627	0.83	+0.2
3,787,330	+		SO3627	0.85	-1.0
3,787,330	+		SO3627	0.85	-1.2
3,787,330	+		SO3627	0.85	-0.8
3,787,330	+		SO3627	0.85	-1.3
3,787,330	+		SO3627	0.85	+0.0
3,787,338	-		SO3627	0.86	-0.9
3,787,338	-		SO3627	0.86	+0.1
3,787,338	-		SO3627	0.86	+0.4
3,787,338	-		SO3627	0.86	-1.0
3,787,338	-		SO3627	0.86	-0.3
3,787,338	-		SO3627	0.86	-2.1
3,787,338	-		SO3627	0.86	-0.6
3,787,338	-		SO3627	0.86	-0.1
3,787,360	-		SO3627	0.89	-0.2
3,787,372	-				-0.4
3,787,373	+				+2.9
3,787,373	+				-1.1
3,787,373	+				+0.1
3,787,373	+				-0.2
3,787,373	+				-0.3
3,787,373	+				+0.2
3,787,373	+				+0.5
3,787,373	+				-1.0
3,787,373	+				+0.8
3,787,373	+				+0.3
3,787,373	+				+0.7
3,787,373	+				+0.0
3,787,381	-				-1.3
3,787,381	-				+0.3
3,787,381	-				+1.7
3,787,381	-				-0.5
3,787,381	-				+0.8
3,787,381	-				+1.9
3,787,381	-				-0.2
3,787,381	-				+0.6
3,787,381	-				-0.4
3,787,381	-				+1.1
3,787,381	-				-1.5
3,787,381	-				-0.3
3,787,419	+				+1.3
3,787,427	-				+1.1
3,787,427	-				+0.8
3,787,473	+				+1.1
3,787,476	-				-0.2
3,787,481	-				-0.6
3,787,484	-				-1.1
3,787,500	+				-0.6
3,787,500	+				-0.5
3,787,500	+				-0.3
3,787,503	-				+0.1
3,787,508	-				-0.2
3,787,508	-				+0.9
3,787,508	-				+0.7
3,787,508	-				+1.0
3,787,515	+				-0.3
3,787,519	-				-0.7
3,787,539	-		SO_3628	0.13	-0.2
3,787,539	-		SO_3628	0.13	-1.4
3,787,544	+		SO_3628	0.14	-0.4
3,787,544	+		SO_3628	0.14	-0.5
3,787,555	+		SO_3628	0.18	-1.8
3,787,567	+		SO_3628	0.21	-0.4
3,787,567	+		SO_3628	0.21	-0.4
3,787,567	+		SO_3628	0.21	+0.5
3,787,567	+		SO_3628	0.21	+0.5
3,787,567	+		SO_3628	0.21	+0.1
3,787,567	+		SO_3628	0.21	-1.9
3,787,567	+		SO_3628	0.21	-0.0
3,787,567	+		SO_3628	0.21	-2.9
3,787,567	+		SO_3628	0.21	-1.1
3,787,575	-		SO_3628	0.24	+0.1
3,787,575	-		SO_3628	0.24	+1.1
3,787,575	-		SO_3628	0.24	+0.1
3,787,575	-		SO_3628	0.24	-0.3
3,787,575	-		SO_3628	0.24	-2.3
3,787,594	+		SO_3628	0.29	-0.5
3,787,594	+		SO_3628	0.29	-0.9
3,787,594	+		SO_3628	0.29	+2.1
3,787,599	+		SO_3628	0.31	+0.0
3,787,599	+		SO_3628	0.31	+1.0
3,787,602	-		SO_3628	0.32	-1.2
3,787,602	-		SO_3628	0.32	+1.2
3,787,602	-		SO_3628	0.32	+0.4
3,787,602	-		SO_3628	0.32	+0.2
3,787,604	+		SO_3628	0.32	+0.3
3,787,607	-		SO_3628	0.33	+3.7
3,787,629	-		SO_3628	0.40	+1.6
3,787,675	+		SO_3628	0.54	-0.2
3,787,709	+		SO_3628	0.64	+1.0
3,787,718	+		SO_3628	0.67	+0.2
3,787,718	+		SO_3628	0.67	+0.2
3,787,718	+		SO_3628	0.67	-0.9
3,787,768	+		SO_3628	0.82	-0.2
3,787,768	+		SO_3628	0.82	-0.3
3,787,776	-		SO_3628	0.85	+1.6
3,787,777	-		SO_3628	0.85	-1.5
3,787,783	+		SO_3628	0.87	-1.4
3,787,800	+				-0.4
3,787,808	-				-0.2
3,787,813	+				-0.1
3,787,813	+				-0.6
3,787,828	+				+1.7
3,787,828	+				+0.2
3,787,828	+				-0.3
3,787,828	+				+3.0
3,787,828	+				-1.1
3,787,828	+				+0.6
3,787,828	+				+1.4
3,787,828	+				-1.3
3,787,828	+				+0.6
3,787,828	+				+0.3
3,787,828	+				-1.3
3,787,829	+				+0.8
3,787,836	-				-1.4
3,787,836	-				-0.7
3,787,836	-				-0.2
3,787,836	-				-0.4
3,787,836	-				-0.3
3,787,836	-				+0.5
3,787,836	-				-0.3
3,787,836	-				-0.2
3,787,836	-				-0.2
3,787,836	-				-0.4
3,787,838	+				+0.2
3,787,838	+				-1.8
3,787,838	+				+0.7
3,787,838	+				+2.8
3,787,838	+				-0.1
3,787,838	+				+0.3
3,787,838	+				-0.1
3,787,838	+				-1.5
3,787,838	+				-0.7
3,787,846	-				-0.2
3,787,846	-				-1.8
3,787,846	-				-0.7
3,787,846	-				+0.0
3,787,846	-				+0.3
3,787,862	+				-0.4
3,787,882	-				-1.7
3,787,896	+				+1.2
3,787,904	-				-0.1
3,787,904	-				-1.5
3,787,932	-				+0.3
3,787,953	+				+0.0
3,787,962	+				+0.5
3,787,962	+				-0.3
3,787,962	+				-0.2
3,787,962	+				-1.9
3,787,962	+				-0.4
3,787,962	+				-1.5
3,787,962	-				-0.8
3,787,970	-				+1.2
3,787,970	-				-0.2
3,787,970	-				+0.2
3,788,035	-				+0.8
3,788,074	+				-0.5
3,788,074	+				+0.6
3,788,083	+				-0.1
3,788,083	+				-1.3
3,788,083	+				-0.9
3,788,083	+				+0.5
3,788,091	-				-1.0
3,788,091	-				+0.8
3,788,117	+				-0.6
3,788,117	+				+0.6
3,788,117	+				+1.2
3,788,117	+				+0.6
3,788,117	-				+0.8
3,788,125	-				-0.5
3,788,125	-				-1.2
3,788,125	-				-1.3
3,788,125	-				-0.6
3,788,125	-				+0.0
3,788,125	-				+1.0
3,788,125	-				+1.0
3,788,125	-				-0.6
3,788,125	-				-0.3
3,788,125	-				+1.2
3,788,153	+				+0.1
3,788,160	-				+0.0
3,788,178	+				-0.5
3,788,178	+				+1.3
3,788,183	+				-0.2
3,788,183	+				+0.1
3,788,183	+				-0.3
3,788,183	+				+0.8
3,788,188	+				-2.0
3,788,191	-				+0.1
3,788,191	-				-1.2
3,788,191	-				-0.8
3,788,191	-				+1.6
3,788,194	-				+0.0
3,788,194	-				+0.6
3,788,202	+				+0.9
3,788,202	+				-0.8
3,788,202	+				-0.2
3,788,202	+				-0.3
3,788,210	-				+2.5
3,788,222	+				-0.8
3,788,229	-				-0.3
3,788,240	+				+0.5
3,788,240	+				-0.1
3,788,240	+				-1.0
3,788,247	+				-0.5
3,788,252	+				-1.0
3,788,252	+				-0.7
3,788,260	-				-0.0
3,788,260	-				-0.3
3,788,296	+				-1.0
3,788,297	+				-0.4
3,788,303	-		SO3629	0.11	-1.2
3,788,306	+		SO3629	0.12	+0.8
3,788,361	-		SO3629	0.25	+0.9
3,788,361	-		SO3629	0.25	-0.8
3,788,376	+		SO3629	0.28	-1.4
3,788,376	+		SO3629	0.28	+0.8
3,788,420	+		SO3629	0.39	-2.1
3,788,427	+		SO3629	0.40	-0.4
3,788,429	-		SO3629	0.41	-0.1
3,788,435	-		SO3629	0.42	-0.0
3,788,474	+		SO3629	0.51	+1.5
3,788,474	-		SO3629	0.51	+0.8
3,788,474	-		SO3629	0.51	-0.4
3,788,482	+		SO3629	0.53	-0.9
3,788,495	+		SO3629	0.56	+0.1
3,788,501	-		SO3629	0.58	-0.9
3,788,501	-		SO3629	0.58	+0.6
3,788,525	+		SO3629	0.63	-0.2
3,788,525	+		SO3629	0.63	-0.5
3,788,526	+		SO3629	0.64	+1.3
3,788,526	+		SO3629	0.64	+0.2
3,788,533	-		SO3629	0.65	-0.1
3,788,534	+		SO3629	0.65	-0.4
3,788,534	+		SO3629	0.65	+1.0
3,788,534	+		SO3629	0.65	+0.3
3,788,534	-		SO3629	0.65	+0.8
3,788,534	-		SO3629	0.65	-0.3
3,788,534	-		SO3629	0.65	-0.1
3,788,542	-		SO3629	0.67	-0.8
3,788,544	+		SO3629	0.68	-0.3
3,788,620	+		SO3629	0.86	+1.1
3,788,620	+		SO3629	0.86	+0.6
3,788,620	+		SO3629	0.86	-1.0
3,788,620	+		SO3629	0.86	-0.0
3,788,620	+		SO3629	0.86	+0.6
3,788,623	-		SO3629	0.87	+0.4
3,788,628	-		SO3629	0.88	+0.2
3,788,630	+		SO3629	0.88	+1.5
3,788,630	+		SO3629	0.88	+0.0
3,788,630	+		SO3629	0.88	-0.7
3,788,630	+		SO3629	0.88	-1.4
3,788,630	+		SO3629	0.88	+1.7
3,788,630	+		SO3629	0.88	+0.3
3,788,630	+		SO3629	0.88	+1.2
3,788,630	+		SO3629	0.88	+0.7
3,788,630	+		SO3629	0.88	+1.1
3,788,630	+		SO3629	0.88	+0.5
3,788,630	+		SO3629	0.88	-0.3
3,788,630	+		SO3629	0.88	+0.1
3,788,638	-				-0.6
3,788,638	-				-1.4
3,788,638	-				+0.5
3,788,638	-				-2.7
3,788,638	-				+0.7
3,788,638	-				-1.2
3,788,638	-				-0.6
3,788,638	-				+2.4
3,788,638	-				-0.2
3,788,638	-				-1.9
3,788,638	-				-0.5
3,788,638	-				-1.2
3,788,638	-				-0.5
3,788,638	-				-1.7
3,788,638	-				+0.4
3,788,638	-				+0.8
3,788,638	-				+0.2
3,788,638	-				-1.5
3,788,638	-				-0.8
3,788,638	-				-0.8
3,788,639	-				-0.2
3,788,652	-				-3.0
3,788,662	-				+0.1
3,788,680	-				-0.6
3,788,693	+				+0.1
3,788,699	+				+0.1
3,788,699	+				-0.9
3,788,700	+				-1.8
3,788,707	-				-0.9
3,788,708	-				+1.2
3,788,708	-				-0.4
3,788,731	-				-2.6
3,788,761	-				+0.2
3,788,774	-				-1.2
3,788,778	+				+1.4
3,788,815	+				-0.5
3,788,823	-				+0.2
3,788,823	-				-0.1
3,788,835	+				+0.2
3,788,835	+				+0.3
3,788,835	+				-0.6
3,788,843	-				+0.8
3,788,843	-				-1.5
3,788,843	-				+0.2
3,788,843	-				-0.1
3,788,843	-				+1.5
3,788,863	+				-0.3
3,788,863	+				-1.6
3,788,863	+				+1.7
3,788,868	+				-0.9
3,788,868	+				+2.0
3,788,868	+				-1.0
3,788,868	+				+0.0
3,788,868	+				-0.4
3,788,868	+				+0.1
3,788,868	+				+0.2
3,788,868	+				+0.4
3,788,868	+				+0.3
3,788,871	-				+1.1
3,788,871	-				-1.6
3,788,873	+				+1.8
3,788,873	+				+0.6
3,788,873	+				-0.5
3,788,873	+				-1.9
3,788,873	+				-1.1
3,788,873	+				+1.2
3,788,873	+				-1.1
3,788,873	+				+0.2
3,788,873	+				+0.2
3,788,873	+				+1.8
3,788,873	+				-0.1
3,788,873	+				+0.5
3,788,873	+				+2.1
3,788,873	+				+1.5
3,788,876	-				+0.0
3,788,876	-				-1.4
3,788,876	-				-0.4
3,788,876	-				+0.3
3,788,881	-				-0.2
3,788,881	-				-1.5
3,788,881	-				-0.8
3,788,881	-				+1.9
3,788,881	-				-0.8
3,788,881	-				-0.2
3,788,881	-				-2.3
3,788,881	-				-1.0
3,788,887	-				+0.1
3,788,888	+				-2.0
3,788,894	+				+1.0
3,788,894	+				-0.1
3,788,896	-				+0.9
3,788,897	-				-0.8
3,788,897	-				+3.4
3,788,897	-				+0.9
3,788,897	-				+0.4
3,788,902	+				-1.0
3,788,902	-				+0.2
3,788,903	+				+0.5
3,788,903	+				-0.5
3,788,903	+				+0.4
3,788,911	-				-0.1
3,788,911	-				-0.3
3,788,911	-				+0.0
3,788,911	-				+1.3
3,788,920	+				+2.4
3,788,963	-				-0.7
3,788,972	+				-0.1
3,788,980	-				-1.9
3,788,986	+				-1.7
3,789,019	+		SO3630	0.18	-1.2
3,789,019	+		SO3630	0.18	-0.1
3,789,027	-		SO3630	0.20	-1.1
3,789,027	-		SO3630	0.20	-0.9
3,789,027	-		SO3630	0.20	+1.3
3,789,027	-		SO3630	0.20	+0.4
3,789,027	-		SO3630	0.20	+1.8
3,789,043	-		SO3630	0.25	-0.8
3,789,045	+		SO3630	0.25	-0.7
3,789,045	+		SO3630	0.25	-1.9
3,789,045	+		SO3630	0.25	-1.9
3,789,045	+		SO3630	0.25	+4.0
3,789,045	+		SO3630	0.25	+0.2
3,789,045	+		SO3630	0.25	+0.6
3,789,050	+		SO3630	0.27	-1.0
3,789,053	-		SO3630	0.27	-1.8
3,789,053	-		SO3630	0.27	-0.5
3,789,053	-		SO3630	0.27	-0.3
3,789,053	-		SO3630	0.27	+0.6
3,789,053	-		SO3630	0.27	-0.5
3,789,053	-		SO3630	0.27	-0.5
3,789,053	-		SO3630	0.27	-1.2
3,789,053	-		SO3630	0.27	+0.5
3,789,053	-		SO3630	0.27	+1.0
3,789,053	-		SO3630	0.27	+0.2
3,789,053	-		SO3630	0.27	-0.0
3,789,053	-		SO3630	0.27	-1.2
3,789,053	-		SO3630	0.27	-0.5
3,789,053	-		SO3630	0.27	+0.2
3,789,053	-		SO3630	0.27	-1.9
3,789,053	-		SO3630	0.27	-1.2
3,789,056	-		SO3630	0.28	+0.4
3,789,058	-		SO3630	0.29	+0.4
3,789,094	-		SO3630	0.38	+0.3
3,789,101	+		SO3630	0.40	-0.5
3,789,119	+		SO3630	0.45	-0.4
3,789,127	-		SO3630	0.47	-0.4
3,789,142	+		SO3630	0.51	-0.3
3,789,199	+		SO3630	0.67	-0.9
3,789,210	+		SO3630	0.70	+1.9
3,789,227	+		SO3630	0.75	+1.8
3,789,227	+		SO3630	0.75	+1.5
3,789,235	-		SO3630	0.77	+0.6
3,789,235	-		SO3630	0.77	-0.5
3,789,235	-		SO3630	0.77	+0.0
3,789,239	+		SO3630	0.78	-1.1
3,789,247	-		SO3630	0.80	+1.3
3,789,253	+		SO3630	0.82	+0.5
3,789,253	+		SO3630	0.82	+0.5
3,789,254	+		SO3630	0.82	-2.8
3,789,254	-		SO3630	0.82	-1.3
3,789,254	-		SO3630	0.82	-1.2
3,789,258	+		SO3630	0.83	+0.0
3,789,258	+		SO3630	0.83	+0.9
3,789,258	+		SO3630	0.83	-0.6
3,789,258	+		SO3630	0.83	+0.4
3,789,258	+		SO3630	0.83	-2.9
3,789,258	+		SO3630	0.83	+2.4
3,789,261	-		SO3630	0.84	-0.3
3,789,263	+		SO3630	0.84	+0.0
3,789,263	+		SO3630	0.84	-0.7
3,789,263	+		SO3630	0.84	+2.4
3,789,263	+		SO3630	0.84	+0.7
3,789,263	+		SO3630	0.84	+3.4
3,789,263	+		SO3630	0.84	+1.9
3,789,266	-		SO3630	0.85	+1.2
3,789,266	-		SO3630	0.85	-1.1
3,789,266	-		SO3630	0.85	-0.0
3,789,266	-		SO3630	0.85	-0.5
3,789,266	-		SO3630	0.85	-0.9
3,789,266	-		SO3630	0.85	-0.8
3,789,266	-		SO3630	0.85	-1.4
3,789,271	-		SO3630	0.86	-0.4
3,789,271	-		SO3630	0.86	+0.8
3,789,276	+		SO3630	0.88	+0.5
3,789,284	-				-0.1
3,789,302	+				+0.8
3,789,310	+				+1.2
3,789,310	+				-0.4
3,789,310	-				-1.8
3,789,310	-				+1.0
3,789,318	-				-0.3
3,789,318	-				+0.3
3,789,421	-				-1.6
3,789,463	-	hprA	SO3631	0.13	-2.6
3,789,476	+	hprA	SO3631	0.14	-0.6
3,789,476	+	hprA	SO3631	0.14	-0.1
3,789,507	+	hprA	SO3631	0.18	+1.0
3,789,507	+	hprA	SO3631	0.18	+0.6
3,789,507	+	hprA	SO3631	0.18	+0.8
3,789,507	+	hprA	SO3631	0.18	+0.4
3,789,507	+	hprA	SO3631	0.18	+1.0
3,789,510	-	hprA	SO3631	0.18	-0.6
3,789,515	-	hprA	SO3631	0.18	+0.9
3,789,515	-	hprA	SO3631	0.18	-0.0
3,789,534	+	hprA	SO3631	0.20	+0.4
3,789,534	+	hprA	SO3631	0.20	+1.8
3,789,535	-	hprA	SO3631	0.21	+0.7
3,789,542	-	hprA	SO3631	0.21	+1.1
3,789,548	-	hprA	SO3631	0.22	+1.0
3,789,575	+	hprA	SO3631	0.25	+0.1
3,789,575	+	hprA	SO3631	0.25	+0.1
3,789,583	-	hprA	SO3631	0.26	-0.0
3,789,583	-	hprA	SO3631	0.26	-1.0
3,789,583	-	hprA	SO3631	0.26	-1.0
3,789,594	+	hprA	SO3631	0.27	-1.6
3,789,594	+	hprA	SO3631	0.27	+1.2
3,789,596	+	hprA	SO3631	0.27	-0.3
3,789,596	+	hprA	SO3631	0.27	+0.4
3,789,602	-	hprA	SO3631	0.28	+0.5
3,789,602	-	hprA	SO3631	0.28	-1.4
3,789,602	-	hprA	SO3631	0.28	-0.8
3,789,625	+	hprA	SO3631	0.30	+0.8
3,789,632	+	hprA	SO3631	0.31	-0.4
3,789,633	-	hprA	SO3631	0.31	-0.4