Experiment: RCH2_defined_glucose_5mM with caffeic 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004325 and ABIE53_004326 are separated by 154 nucleotides ABIE53_004326 and ABIE53_004327 are separated by 112 nucleotides ABIE53_004327 and ABIE53_004328 are separated by 378 nucleotides ABIE53_004328 and ABIE53_004329 are separated by 26 nucleotides
ABIE53_004325: ABIE53_004325 - hypothetical protein, at 500,269 to 500,586
_004325
ABIE53_004326: ABIE53_004326 - acyl homoserine lactone synthase, at 500,741 to 501,334
_004326
ABIE53_004327: ABIE53_004327 - GntR family transcriptional repressor for pyruvate dehydrogenase complex, at 501,447 to 501,992
_004327
ABIE53_004328: ABIE53_004328 - nucleotide-binding universal stress UspA family protein, at 502,371 to 502,850
_004328
ABIE53_004329: ABIE53_004329 - two-component system response regulator ChvI, at 502,877 to 503,410
_004329
Position (kb) 501
502 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 500.618 kb on - strand at 500.618 kb on - strand at 500.618 kb on - strand at 500.655 kb on + strand at 500.655 kb on + strand at 500.655 kb on + strand at 500.655 kb on + strand at 500.655 kb on + strand at 500.655 kb on + strand at 500.655 kb on + strand at 500.655 kb on + strand at 500.656 kb on - strand at 500.656 kb on - strand at 500.656 kb on - strand at 500.656 kb on - strand at 500.656 kb on - strand at 500.663 kb on + strand at 500.663 kb on + strand at 500.664 kb on - strand at 500.667 kb on + strand at 500.667 kb on + strand at 500.667 kb on + strand at 500.667 kb on + strand at 500.667 kb on + strand at 500.667 kb on + strand at 500.667 kb on + strand at 500.667 kb on + strand at 500.667 kb on + strand at 500.667 kb on + strand at 500.667 kb on + strand at 500.667 kb on + strand at 500.667 kb on + strand at 500.667 kb on + strand at 500.667 kb on + strand at 500.667 kb on + strand at 500.667 kb on + strand at 500.668 kb on - strand at 500.668 kb on - strand at 500.668 kb on - strand at 500.668 kb on - strand at 500.668 kb on - strand at 500.668 kb on - strand at 500.668 kb on - strand at 500.668 kb on - strand at 500.668 kb on - strand at 500.668 kb on - strand at 500.668 kb on - strand at 500.668 kb on - strand at 500.668 kb on - strand at 500.668 kb on - strand at 500.668 kb on - strand at 500.693 kb on + strand at 500.693 kb on + strand at 500.707 kb on + strand at 500.707 kb on + strand at 500.707 kb on + strand at 500.708 kb on - strand at 500.708 kb on - strand at 500.708 kb on - strand at 500.708 kb on - strand at 500.804 kb on + strand, within ABIE53_004326 at 500.804 kb on + strand, within ABIE53_004326 at 500.804 kb on + strand, within ABIE53_004326 at 500.805 kb on - strand, within ABIE53_004326 at 500.805 kb on - strand, within ABIE53_004326 at 500.805 kb on - strand, within ABIE53_004326 at 500.805 kb on - strand, within ABIE53_004326 at 500.805 kb on - strand, within ABIE53_004326 at 500.805 kb on - strand, within ABIE53_004326 at 500.805 kb on - strand, within ABIE53_004326 at 500.805 kb on - strand, within ABIE53_004326 at 500.805 kb on - strand, within ABIE53_004326 at 500.805 kb on - strand, within ABIE53_004326 at 500.805 kb on - strand, within ABIE53_004326 at 500.805 kb on - strand, within ABIE53_004326 at 500.848 kb on + strand, within ABIE53_004326 at 500.848 kb on + strand, within ABIE53_004326 at 500.848 kb on + strand, within ABIE53_004326 at 500.848 kb on + strand, within ABIE53_004326 at 500.849 kb on - strand, within ABIE53_004326 at 500.859 kb on + strand, within ABIE53_004326 at 500.859 kb on + strand, within ABIE53_004326 at 500.860 kb on - strand, within ABIE53_004326 at 500.860 kb on - strand, within ABIE53_004326 at 500.882 kb on + strand, within ABIE53_004326 at 500.882 kb on + strand, within ABIE53_004326 at 500.883 kb on - strand, within ABIE53_004326 at 500.883 kb on - strand, within ABIE53_004326 at 500.903 kb on + strand, within ABIE53_004326 at 500.903 kb on + strand, within ABIE53_004326 at 500.903 kb on + strand, within ABIE53_004326 at 500.903 kb on + strand, within ABIE53_004326 at 500.903 kb on + strand, within ABIE53_004326 at 500.903 kb on + strand, within ABIE53_004326 at 500.903 kb on + strand, within ABIE53_004326 at 500.903 kb on + strand, within ABIE53_004326 at 500.903 kb on + strand, within ABIE53_004326 at 500.903 kb on + strand, within ABIE53_004326 at 500.903 kb on + strand, within ABIE53_004326 at 500.903 kb on + strand, within ABIE53_004326 at 500.903 kb on + strand, within ABIE53_004326 at 500.903 kb on + strand, within ABIE53_004326 at 500.904 kb on - strand, within ABIE53_004326 at 500.904 kb on - strand, within ABIE53_004326 at 500.904 kb on - strand, within ABIE53_004326 at 500.904 kb on - strand, within ABIE53_004326 at 500.904 kb on - strand, within ABIE53_004326 at 500.904 kb on - strand, within ABIE53_004326 at 500.904 kb on - strand, within ABIE53_004326 at 500.904 kb on - strand, within ABIE53_004326 at 500.904 kb on - strand, within ABIE53_004326 at 500.904 kb on - strand, within ABIE53_004326 at 500.904 kb on - strand, within ABIE53_004326 at 500.904 kb on - strand, within ABIE53_004326 at 500.904 kb on - strand, within ABIE53_004326 at 500.904 kb on - strand, within ABIE53_004326 at 500.904 kb on - strand, within ABIE53_004326 at 501.161 kb on + strand, within ABIE53_004326 at 501.161 kb on + strand, within ABIE53_004326 at 501.161 kb on + strand, within ABIE53_004326 at 501.161 kb on + strand, within ABIE53_004326 at 501.161 kb on + strand, within ABIE53_004326 at 501.161 kb on + strand, within ABIE53_004326 at 501.161 kb on + strand, within ABIE53_004326 at 501.162 kb on - strand, within ABIE53_004326 at 501.162 kb on - strand, within ABIE53_004326 at 501.162 kb on - strand, within ABIE53_004326 at 501.162 kb on - strand, within ABIE53_004326 at 501.162 kb on - strand, within ABIE53_004326 at 501.332 kb on + strand at 501.332 kb on + strand at 501.332 kb on + strand at 501.332 kb on + strand at 501.333 kb on - strand at 501.333 kb on - strand at 501.333 kb on - strand at 501.333 kb on - strand at 501.405 kb on + strand at 501.406 kb on - strand at 501.449 kb on - strand at 501.851 kb on - strand, within ABIE53_004327 at 502.061 kb on + strand at 502.061 kb on + strand at 502.061 kb on + strand at 502.061 kb on + strand at 502.062 kb on - strand at 502.062 kb on - strand at 502.166 kb on - strand at 502.166 kb on - strand at 502.166 kb on - strand at 502.178 kb on + strand at 502.179 kb on - strand at 502.305 kb on + strand at 502.305 kb on + strand at 502.305 kb on + strand at 502.306 kb on - strand at 502.306 kb on - strand at 502.306 kb on - strand at 502.306 kb on - strand at 502.370 kb on + strand at 502.370 kb on + strand at 502.370 kb on + strand at 502.370 kb on + strand at 502.370 kb on + strand at 502.370 kb on + strand at 502.370 kb on + strand at 502.370 kb on + strand at 502.371 kb on - strand at 502.374 kb on + strand at 502.374 kb on + strand at 502.374 kb on + strand at 502.374 kb on + strand at 502.374 kb on + strand at 502.374 kb on + strand at 502.374 kb on + strand at 502.374 kb on + strand at 502.374 kb on + strand at 502.374 kb on + strand at 502.374 kb on + strand at 502.374 kb on + strand at 502.374 kb on + strand at 502.374 kb on + strand at 502.374 kb on + strand at 502.375 kb on - strand at 502.375 kb on - strand at 502.375 kb on - strand at 502.375 kb on - strand at 502.375 kb on - strand at 502.375 kb on - strand at 502.375 kb on - strand at 502.375 kb on - strand at 502.375 kb on - strand at 502.375 kb on - strand at 502.479 kb on + strand, within ABIE53_004328 at 502.479 kb on + strand, within ABIE53_004328 at 502.479 kb on + strand, within ABIE53_004328 at 502.479 kb on + strand, within ABIE53_004328 at 502.479 kb on + strand, within ABIE53_004328 at 502.479 kb on + strand, within ABIE53_004328 at 502.480 kb on - strand, within ABIE53_004328 at 502.480 kb on - strand, within ABIE53_004328 at 502.480 kb on - strand, within ABIE53_004328 at 502.480 kb on - strand, within ABIE53_004328 at 502.480 kb on - strand, within ABIE53_004328 at 502.503 kb on + strand, within ABIE53_004328 at 502.503 kb on + strand, within ABIE53_004328 at 502.503 kb on + strand, within ABIE53_004328 at 502.503 kb on + strand, within ABIE53_004328 at 502.521 kb on + strand, within ABIE53_004328 at 502.654 kb on + strand, within ABIE53_004328 at 502.654 kb on + strand, within ABIE53_004328 at 502.654 kb on + strand, within ABIE53_004328 at 502.654 kb on + strand, within ABIE53_004328 at 502.654 kb on + strand, within ABIE53_004328 at 502.654 kb on + strand, within ABIE53_004328 at 502.654 kb on + strand, within ABIE53_004328 at 502.654 kb on + strand, within ABIE53_004328 at 502.654 kb on + strand, within ABIE53_004328 at 502.655 kb on - strand, within ABIE53_004328 at 502.655 kb on - strand, within ABIE53_004328 at 502.655 kb on - strand, within ABIE53_004328 at 502.655 kb on - strand, within ABIE53_004328 at 502.655 kb on - strand, within ABIE53_004328 at 502.655 kb on - strand, within ABIE53_004328 at 502.655 kb on - strand, within ABIE53_004328 at 502.655 kb on - strand, within ABIE53_004328 at 502.655 kb on - strand, within ABIE53_004328 at 502.655 kb on - strand, within ABIE53_004328 at 502.655 kb on - strand, within ABIE53_004328 at 502.655 kb on - strand, within ABIE53_004328 at 502.655 kb on - strand, within ABIE53_004328 at 502.655 kb on - strand, within ABIE53_004328
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with caffeic 1 mM remove 500,618 - -0.0 500,618 - -1.3 500,618 - +0.2 500,655 + +0.1 500,655 + +0.6 500,655 + +3.1 500,655 + +2.4 500,655 + +2.0 500,655 + -0.2 500,655 + +1.2 500,655 + +0.8 500,656 - +0.5 500,656 - +2.0 500,656 - +0.9 500,656 - +0.3 500,656 - -1.4 500,663 + +1.4 500,663 + +1.2 500,664 - +0.4 500,667 + -1.4 500,667 + -0.2 500,667 + -1.5 500,667 + +0.5 500,667 + -1.9 500,667 + +0.2 500,667 + +0.6 500,667 + -0.8 500,667 + -0.2 500,667 + -0.3 500,667 + -0.4 500,667 + -0.2 500,667 + +0.3 500,667 + -1.0 500,667 + +0.8 500,667 + +0.6 500,667 + -0.3 500,668 - -0.2 500,668 - -0.0 500,668 - -0.2 500,668 - -0.5 500,668 - -0.9 500,668 - -1.0 500,668 - -0.1 500,668 - -0.0 500,668 - -0.3 500,668 - -0.2 500,668 - -1.6 500,668 - +0.3 500,668 - -0.0 500,668 - -0.8 500,668 - +1.3 500,693 + -0.5 500,693 + +0.8 500,707 + -0.1 500,707 + +0.8 500,707 + -1.0 500,708 - +0.0 500,708 - +0.6 500,708 - -2.2 500,708 - +0.8 500,804 + ABIE53_004326 0.11 -0.2 500,804 + ABIE53_004326 0.11 +2.6 500,804 + ABIE53_004326 0.11 -1.1 500,805 - ABIE53_004326 0.11 +0.4 500,805 - ABIE53_004326 0.11 -0.7 500,805 - ABIE53_004326 0.11 -0.2 500,805 - ABIE53_004326 0.11 -0.9 500,805 - ABIE53_004326 0.11 -0.5 500,805 - ABIE53_004326 0.11 +0.6 500,805 - ABIE53_004326 0.11 +2.2 500,805 - ABIE53_004326 0.11 -2.1 500,805 - ABIE53_004326 0.11 -0.5 500,805 - ABIE53_004326 0.11 -0.6 500,805 - ABIE53_004326 0.11 +0.2 500,805 - ABIE53_004326 0.11 -1.5 500,848 + ABIE53_004326 0.18 -0.1 500,848 + ABIE53_004326 0.18 -0.0 500,848 + ABIE53_004326 0.18 +0.1 500,848 + ABIE53_004326 0.18 +1.6 500,849 - ABIE53_004326 0.18 -0.5 500,859 + ABIE53_004326 0.20 +0.1 500,859 + ABIE53_004326 0.20 +0.2 500,860 - ABIE53_004326 0.20 -0.8 500,860 - ABIE53_004326 0.20 -0.2 500,882 + ABIE53_004326 0.24 -0.5 500,882 + ABIE53_004326 0.24 +0.2 500,883 - ABIE53_004326 0.24 -1.4 500,883 - ABIE53_004326 0.24 +1.3 500,903 + ABIE53_004326 0.27 +0.9 500,903 + ABIE53_004326 0.27 -0.3 500,903 + ABIE53_004326 0.27 +0.8 500,903 + ABIE53_004326 0.27 -0.5 500,903 + ABIE53_004326 0.27 +0.8 500,903 + ABIE53_004326 0.27 +2.4 500,903 + ABIE53_004326 0.27 +2.3 500,903 + ABIE53_004326 0.27 +0.2 500,903 + ABIE53_004326 0.27 -0.6 500,903 + ABIE53_004326 0.27 +0.8 500,903 + ABIE53_004326 0.27 +0.1 500,903 + ABIE53_004326 0.27 +0.2 500,903 + ABIE53_004326 0.27 -0.5 500,903 + ABIE53_004326 0.27 -0.8 500,904 - ABIE53_004326 0.27 -0.1 500,904 - ABIE53_004326 0.27 -0.0 500,904 - ABIE53_004326 0.27 -1.5 500,904 - ABIE53_004326 0.27 +0.1 500,904 - ABIE53_004326 0.27 -0.9 500,904 - ABIE53_004326 0.27 +0.3 500,904 - ABIE53_004326 0.27 -0.5 500,904 - ABIE53_004326 0.27 +0.4 500,904 - ABIE53_004326 0.27 -0.9 500,904 - ABIE53_004326 0.27 +2.6 500,904 - ABIE53_004326 0.27 -0.4 500,904 - ABIE53_004326 0.27 +0.6 500,904 - ABIE53_004326 0.27 -2.4 500,904 - ABIE53_004326 0.27 +0.5 500,904 - ABIE53_004326 0.27 +0.6 501,161 + ABIE53_004326 0.71 -1.4 501,161 + ABIE53_004326 0.71 +0.3 501,161 + ABIE53_004326 0.71 +0.2 501,161 + ABIE53_004326 0.71 -1.0 501,161 + ABIE53_004326 0.71 +0.7 501,161 + ABIE53_004326 0.71 +0.8 501,161 + ABIE53_004326 0.71 -1.0 501,162 - ABIE53_004326 0.71 -0.9 501,162 - ABIE53_004326 0.71 -1.2 501,162 - ABIE53_004326 0.71 +0.2 501,162 - ABIE53_004326 0.71 -1.4 501,162 - ABIE53_004326 0.71 +0.5 501,332 + -2.1 501,332 + +0.3 501,332 + -0.8 501,332 + +1.0 501,333 - +0.5 501,333 - +0.8 501,333 - -0.6 501,333 - -0.1 501,405 + -0.1 501,406 - -1.7 501,449 - +3.0 501,851 - ABIE53_004327 0.74 +1.3 502,061 + +1.1 502,061 + +0.9 502,061 + -0.1 502,061 + -1.8 502,062 - -0.3 502,062 - -1.5 502,166 - -1.0 502,166 - +0.0 502,166 - +0.2 502,178 + +0.6 502,179 - +0.5 502,305 + -2.0 502,305 + +0.4 502,305 + -1.4 502,306 - +0.0 502,306 - -1.4 502,306 - -0.0 502,306 - -0.3 502,370 + -0.5 502,370 + -1.0 502,370 + +0.9 502,370 + +0.4 502,370 + -1.2 502,370 + -0.5 502,370 + -0.4 502,370 + +0.4 502,371 - +1.2 502,374 + +1.8 502,374 + +0.2 502,374 + -0.3 502,374 + +0.3 502,374 + -1.2 502,374 + +2.0 502,374 + +0.0 502,374 + -0.9 502,374 + -0.5 502,374 + -1.2 502,374 + +0.8 502,374 + +0.4 502,374 + -0.7 502,374 + -0.9 502,374 + -2.0 502,375 - +1.0 502,375 - -1.3 502,375 - +0.2 502,375 - -3.6 502,375 - -0.5 502,375 - +1.9 502,375 - +0.6 502,375 - -0.1 502,375 - +0.1 502,375 - -0.5 502,479 + ABIE53_004328 0.23 +0.2 502,479 + ABIE53_004328 0.23 +1.0 502,479 + ABIE53_004328 0.23 +0.8 502,479 + ABIE53_004328 0.23 -1.4 502,479 + ABIE53_004328 0.23 -1.6 502,479 + ABIE53_004328 0.23 -1.2 502,480 - ABIE53_004328 0.23 -0.5 502,480 - ABIE53_004328 0.23 -1.3 502,480 - ABIE53_004328 0.23 -1.4 502,480 - ABIE53_004328 0.23 -3.2 502,480 - ABIE53_004328 0.23 +0.7 502,503 + ABIE53_004328 0.28 -1.4 502,503 + ABIE53_004328 0.28 -1.6 502,503 + ABIE53_004328 0.28 +0.0 502,503 + ABIE53_004328 0.28 -0.7 502,521 + ABIE53_004328 0.31 +0.0 502,654 + ABIE53_004328 0.59 -1.6 502,654 + ABIE53_004328 0.59 +0.2 502,654 + ABIE53_004328 0.59 -1.5 502,654 + ABIE53_004328 0.59 +0.5 502,654 + ABIE53_004328 0.59 -2.6 502,654 + ABIE53_004328 0.59 -0.6 502,654 + ABIE53_004328 0.59 -0.1 502,654 + ABIE53_004328 0.59 +0.2 502,654 + ABIE53_004328 0.59 +0.4 502,655 - ABIE53_004328 0.59 -0.8 502,655 - ABIE53_004328 0.59 +1.6 502,655 - ABIE53_004328 0.59 -0.7 502,655 - ABIE53_004328 0.59 -0.4 502,655 - ABIE53_004328 0.59 -1.9 502,655 - ABIE53_004328 0.59 -0.1 502,655 - ABIE53_004328 0.59 +0.1 502,655 - ABIE53_004328 0.59 -1.2 502,655 - ABIE53_004328 0.59 +0.1 502,655 - ABIE53_004328 0.59 +0.8 502,655 - ABIE53_004328 0.59 -2.8 502,655 - ABIE53_004328 0.59 +0.3 502,655 - ABIE53_004328 0.59 -1.3 502,655 - ABIE53_004328 0.59 -1.2
Or see this region's nucleotide sequence