Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003260

Experiment: RCH2_defined_glucose_5mM with caffeic 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose_5mM with caffeic 1 mM
3,676,385	+				+0.7
3,676,386	-				-0.5
3,676,390	+				-1.4
3,676,391	-				-0.4
3,676,391	-				-1.4
3,676,411	+		ABIE53_003852	0.14	+0.3
3,676,411	+		ABIE53_003852	0.14	+1.2
3,676,411	+		ABIE53_003852	0.14	+0.1
3,676,411	+		ABIE53_003852	0.14	-1.1
3,676,411	+		ABIE53_003852	0.14	-0.7
3,676,411	+		ABIE53_003852	0.14	+0.9
3,676,411	+		ABIE53_003852	0.14	+0.9
3,676,411	+		ABIE53_003852	0.14	-0.1
3,676,411	+		ABIE53_003852	0.14	-0.4
3,676,411	+		ABIE53_003852	0.14	+0.3
3,676,411	+		ABIE53_003852	0.14	+0.3
3,676,411	+		ABIE53_003852	0.14	+0.1
3,676,412	-		ABIE53_003852	0.15	-1.5
3,676,412	-		ABIE53_003852	0.15	-1.0
3,676,412	-		ABIE53_003852	0.15	+0.7
3,676,412	-		ABIE53_003852	0.15	-0.1
3,676,412	-		ABIE53_003852	0.15	+1.1
3,676,412	-		ABIE53_003852	0.15	+0.0
3,676,412	-		ABIE53_003852	0.15	-0.6
3,676,412	-		ABIE53_003852	0.15	+0.7
3,676,412	-		ABIE53_003852	0.15	+1.3
3,676,412	-		ABIE53_003852	0.15	-0.6
3,676,413	+		ABIE53_003852	0.16	+0.6
3,676,413	+		ABIE53_003852	0.16	-2.1
3,676,413	+		ABIE53_003852	0.16	+0.3
3,676,413	+		ABIE53_003852	0.16	-0.1
3,676,413	+		ABIE53_003852	0.16	-1.7
3,676,413	+		ABIE53_003852	0.16	-0.2
3,676,413	+		ABIE53_003852	0.16	+2.2
3,676,414	-		ABIE53_003852	0.18	+1.0
3,676,414	-		ABIE53_003852	0.18	-1.8
3,676,419	+		ABIE53_003852	0.24	-1.3
3,676,419	+		ABIE53_003852	0.24	+0.4
3,676,419	+		ABIE53_003852	0.24	-1.6
3,676,419	+		ABIE53_003852	0.24	+0.3
3,676,419	+		ABIE53_003852	0.24	-1.9
3,676,419	+		ABIE53_003852	0.24	-0.2
3,676,419	+		ABIE53_003852	0.24	+1.9
3,676,419	+		ABIE53_003852	0.24	-0.0
3,676,419	+		ABIE53_003852	0.24	+0.1
3,676,419	+		ABIE53_003852	0.24	+0.9
3,676,419	+		ABIE53_003852	0.24	-1.0
3,676,420	-		ABIE53_003852	0.26	+1.3
3,676,420	-		ABIE53_003852	0.26	-1.1
3,676,420	-		ABIE53_003852	0.26	-0.4
3,676,422	+		ABIE53_003852	0.28	+0.9
3,676,422	+		ABIE53_003852	0.28	+0.3
3,676,422	+		ABIE53_003852	0.28	-0.5
3,676,422	+		ABIE53_003852	0.28	-0.6
3,676,422	+		ABIE53_003852	0.28	+2.2
3,676,422	+		ABIE53_003852	0.28	-0.3
3,676,422	+		ABIE53_003852	0.28	-0.1
3,676,423	-		ABIE53_003852	0.30	-1.8
3,676,423	-		ABIE53_003852	0.30	-2.0
3,676,423	-		ABIE53_003852	0.30	+0.3
3,676,423	-		ABIE53_003852	0.30	+0.2
3,676,427	+		ABIE53_003852	0.35	-2.8
3,676,427	+		ABIE53_003852	0.35	+1.3
3,676,427	+		ABIE53_003852	0.35	+2.6
3,676,427	+		ABIE53_003852	0.35	-1.7
3,676,427	+		ABIE53_003852	0.35	-0.3
3,676,428	-		ABIE53_003852	0.36	+2.0
3,676,428	-		ABIE53_003852	0.36	+0.6
3,676,428	-		ABIE53_003852	0.36	+3.1
3,676,428	-		ABIE53_003852	0.36	+0.9
3,676,440	+		ABIE53_003852	0.53	-0.7
3,676,441	-		ABIE53_003852	0.54	-0.7
3,676,441	-		ABIE53_003852	0.54	+0.0
3,676,477	+				+0.6
3,676,477	+				+0.1
3,676,477	+				-1.8
3,676,477	+				+0.9
3,676,478	-				-0.7
3,676,522	+				-2.5
3,676,522	+				+2.9
3,676,523	-				-0.1
3,676,523	-				+0.6
3,676,594	+		ABIE53_003259	0.19	+2.7
3,676,607	+		ABIE53_003259	0.24	-0.5
3,676,607	+		ABIE53_003259	0.24	+0.5
3,676,607	+		ABIE53_003259	0.24	-0.6
3,676,607	+		ABIE53_003259	0.24	+0.3
3,676,607	+		ABIE53_003259	0.24	+1.1
3,676,608	-		ABIE53_003259	0.24	-0.1
3,676,608	-		ABIE53_003259	0.24	-1.1
3,676,608	-		ABIE53_003259	0.24	-0.0
3,676,608	-		ABIE53_003259	0.24	-0.8
3,676,608	-		ABIE53_003259	0.24	-0.2
3,676,608	-		ABIE53_003259	0.24	+0.2
3,676,609	+		ABIE53_003259	0.25	-2.3
3,676,609	+		ABIE53_003259	0.25	+1.0
3,676,609	+		ABIE53_003259	0.25	-0.7
3,676,609	+		ABIE53_003259	0.25	-0.1
3,676,610	-		ABIE53_003259	0.25	-0.4
3,676,610	-		ABIE53_003259	0.25	-0.9
3,676,610	-		ABIE53_003259	0.25	-2.0
3,676,610	-		ABIE53_003259	0.25	+0.5
3,676,610	-		ABIE53_003259	0.25	+1.2
3,676,678	+		ABIE53_003259	0.50	-0.4
3,676,678	+		ABIE53_003259	0.50	-0.7
3,676,678	+		ABIE53_003259	0.50	+0.5
3,676,679	-		ABIE53_003259	0.50	-0.4
3,676,679	-		ABIE53_003259	0.50	-0.5
3,676,783	+		ABIE53_003259	0.88	-0.1
3,676,783	+		ABIE53_003259	0.88	-1.5
3,676,783	+		ABIE53_003259	0.88	+1.4
3,676,783	+		ABIE53_003259	0.88	+0.6
3,676,783	+		ABIE53_003259	0.88	-0.5
3,676,783	+		ABIE53_003259	0.88	+0.4
3,676,783	+		ABIE53_003259	0.88	-0.8
3,676,784	-		ABIE53_003259	0.89	+1.6
3,676,784	-		ABIE53_003259	0.89	-0.1
3,676,784	-		ABIE53_003259	0.89	+0.1
3,676,784	-		ABIE53_003259	0.89	+0.3
3,676,841	+				-1.1
3,676,842	-				+0.8
3,676,946	-				+0.3
3,676,970	+				-0.5
3,676,970	+				+2.7
3,676,970	+				+1.9
3,676,970	+				-0.7
3,676,971	-				-0.0
3,676,971	-				-1.8
3,676,981	+				-0.3
3,676,982	-				-0.5
3,676,990	+				+0.6
3,676,990	+				-2.1
3,676,990	+				+1.2
3,676,990	+				-1.2
3,676,991	-				-0.8
3,676,991	-				-0.8
3,677,017	+				-0.0
3,677,017	+				-0.0
3,677,017	+				-0.5
3,677,017	+				-0.8
3,677,018	-				-1.4
3,677,018	-				+0.8
3,677,018	-				-0.9
3,677,018	-				-0.1
3,677,018	-				-0.4
3,677,083	+				-0.1
3,677,083	+				+0.9
3,677,083	+				+1.5
3,677,084	-				-0.7
3,677,084	-				+0.1
3,677,084	-				-1.0
3,677,084	-				-0.6
3,677,084	-				-2.1
3,677,088	+				-0.5
3,677,089	-				-0.6
3,677,089	-				-3.0
3,677,089	-				-1.3
3,677,175	+				+0.2
3,677,176	-				-0.1
3,677,176	-				-0.7
3,677,177	+				+0.1
3,677,177	+				+0.3
3,677,178	-				+2.1
3,677,248	+				-0.7
3,677,248	+				-0.4
3,677,248	+				-1.9
3,677,248	+				-1.6
3,677,248	+				+1.9
3,677,248	+				+2.8
3,677,248	+				-2.1
3,677,248	+				+0.6
3,677,248	+				+0.5
3,677,248	+				-0.6
3,677,248	+				-2.2
3,677,249	-				-1.2
3,677,249	-				+0.9
3,677,249	-				-0.9
3,677,249	-				+1.0
3,677,249	-				+0.8
3,677,249	-				+1.9
3,677,249	-				-1.3
3,677,249	-				+0.1
3,677,249	-				+1.9
3,677,249	-				+0.9
3,677,249	-				-2.9
3,677,349	+				+5.4
3,677,349	+				-1.3
3,677,349	+				-1.3
3,677,349	+				-0.3
3,677,349	+				-0.7
3,677,349	+				-0.9
3,677,349	+				+0.6
3,677,349	+				-1.7
3,677,349	+				+1.9
3,677,349	+				-3.0
3,677,349	+				+2.5
3,677,349	+				-1.1
3,677,349	+				-0.7
3,677,349	+				-0.9
3,677,349	+				-0.9
3,677,350	-				+0.9
3,677,350	-				-1.7
3,677,350	-				+0.5
3,677,350	-				-1.1
3,677,350	-				+0.4
3,677,350	-				+0.9
3,677,350	-				-0.9
3,677,350	-				+0.5
3,677,350	-				+1.2
3,677,350	-				-0.8
3,677,350	-				+0.9
3,677,931	+		ABIE53_003260	0.73	-1.3
3,677,931	+		ABIE53_003260	0.73	+0.3
3,677,945	+		ABIE53_003260	0.74	-1.3
3,677,945	+		ABIE53_003260	0.74	-3.5
3,677,945	+		ABIE53_003260	0.74	-0.1
3,677,945	+		ABIE53_003260	0.74	-0.4
3,677,946	-		ABIE53_003260	0.74	-0.8
3,677,975	+		ABIE53_003260	0.78	-2.2
3,677,975	+		ABIE53_003260	0.78	-1.4
3,677,975	+		ABIE53_003260	0.78	-3.0
3,677,975	+		ABIE53_003260	0.78	-1.8
3,677,975	+		ABIE53_003260	0.78	-1.1
3,677,975	+		ABIE53_003260	0.78	-1.9
3,677,976	-		ABIE53_003260	0.78	-1.3
3,677,976	-		ABIE53_003260	0.78	-2.9
3,678,038	+		ABIE53_003260	0.86	-1.3
3,678,038	+		ABIE53_003260	0.86	-1.3
3,678,039	-		ABIE53_003260	0.86	-2.9
3,678,039	-		ABIE53_003260	0.86	+0.3
3,678,056	+		ABIE53_003260	0.89	-0.1
3,678,056	+		ABIE53_003260	0.89	-0.1
3,678,057	-		ABIE53_003260	0.89	-1.3
3,678,057	-		ABIE53_003260	0.89	-1.8
3,678,143	+				+0.6
3,678,187	-				-0.7
3,678,205	+				-0.1
3,678,205	+				+0.3
3,678,205	+				+0.4
3,678,205	+				+0.2
3,678,205	+				-1.8
3,678,205	+				-2.9
3,678,205	+				+0.3
3,678,205	+				+0.2
3,678,205	+				-0.3
3,678,205	+				+0.6
3,678,205	+				+1.2
3,678,205	+				-1.4
3,678,205	+				-2.3
3,678,205	+				-0.3
3,678,205	+				-1.3
3,678,206	-				+0.3
3,678,206	-				-1.7
3,678,206	-				-0.7
3,678,206	-				-0.1
3,678,206	-				+0.9
3,678,206	-				-0.4
3,678,206	-				-0.2
3,678,206	-				-1.3
3,678,206	-				-0.4
3,678,206	-				-0.1
3,678,206	-				+0.9
3,678,206	-				+1.4
3,678,206	-				-0.1
3,678,206	-				-0.0
3,678,206	-				+0.5
3,678,206	-				-1.2
3,678,206	-				+1.9
3,678,206	-				+2.5
3,678,279	+				+0.0
3,678,279	+				-1.1
3,678,280	-				-0.4
3,678,280	-				+0.6
3,678,281	+				-0.1
3,678,281	+				-1.6
3,678,354	+		ABIE53_003261	0.12	-3.0
3,678,355	-		ABIE53_003261	0.12	-2.3
3,678,355	-		ABIE53_003261	0.12	-2.6
3,678,355	-		ABIE53_003261	0.12	-2.0
3,678,356	+		ABIE53_003261	0.12	-2.8
3,678,356	+		ABIE53_003261	0.12	-1.1
3,678,356	+		ABIE53_003261	0.12	-2.9
3,678,356	+		ABIE53_003261	0.12	-1.7
3,678,356	+		ABIE53_003261	0.12	-1.4
3,678,356	+		ABIE53_003261	0.12	-0.7
3,678,356	+		ABIE53_003261	0.12	+0.3
3,678,357	-		ABIE53_003261	0.12	-0.7
3,678,357	-		ABIE53_003261	0.12	-1.9
3,678,357	-		ABIE53_003261	0.12	-3.3
3,678,357	-		ABIE53_003261	0.12	+0.3
3,678,461	+		ABIE53_003261	0.25	-1.3
3,678,461	+		ABIE53_003261	0.25	-0.9
3,678,461	+		ABIE53_003261	0.25	-0.8
3,678,461	+		ABIE53_003261	0.25	-2.7
3,678,462	-		ABIE53_003261	0.25	-2.2
3,678,462	-		ABIE53_003261	0.25	-4.7
3,678,462	-		ABIE53_003261	0.25	-0.9
3,678,462	-		ABIE53_003261	0.25	-3.5
3,678,462	-		ABIE53_003261	0.25	-2.6
3,678,462	-		ABIE53_003261	0.25	-3.9
3,678,462	-		ABIE53_003261	0.25	-4.7
3,678,462	-		ABIE53_003261	0.25	+0.3
3,678,471	-		ABIE53_003261	0.26	-1.8
3,678,471	-		ABIE53_003261	0.26	-1.4
3,678,835	+		ABIE53_003261	0.69	-1.7
3,678,835	+		ABIE53_003261	0.69	-2.6
3,678,835	+		ABIE53_003261	0.69	-2.6
3,678,835	+		ABIE53_003261	0.69	-3.5
3,678,835	+		ABIE53_003261	0.69	-1.8
3,678,835	+		ABIE53_003261	0.69	-3.9
3,678,835	+		ABIE53_003261	0.69	-2.5
3,678,835	+		ABIE53_003261	0.69	-3.7
3,678,835	+		ABIE53_003261	0.69	-3.6
3,678,835	+		ABIE53_003261	0.69	-3.7
3,678,835	+		ABIE53_003261	0.69	-0.7
3,678,836	-		ABIE53_003261	0.69	-2.2
3,678,836	-		ABIE53_003261	0.69	-2.1
3,678,836	-		ABIE53_003261	0.69	-2.8
3,678,836	-		ABIE53_003261	0.69	-3.1
3,679,084	+				-1.6
3,679,085	-				-1.4
3,679,112	+				-2.2
3,679,113	-				+1.4