Experiment: RCH2_defined_glucose_5mM with caffeic 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000910 and ABIE53_000911 are separated by 92 nucleotides ABIE53_000911 and ABIE53_000912 are separated by 144 nucleotides
ABIE53_000910: ABIE53_000910 - putative transport protein, at 986,442 to 988,124
_000910
ABIE53_000911: ABIE53_000911 - aspartate 4-decarboxylase, at 988,217 to 989,881
_000911
ABIE53_000912: ABIE53_000912 - alanine-glyoxylate transaminase/serine-glyoxylate transaminase/serine-pyruvate transaminase, at 990,026 to 991,249
_000912
Position (kb) 988
989
990 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 987.435 kb on + strand, within ABIE53_000910 at 987.435 kb on + strand, within ABIE53_000910 at 987.435 kb on + strand, within ABIE53_000910 at 987.435 kb on + strand, within ABIE53_000910 at 987.436 kb on - strand, within ABIE53_000910 at 987.436 kb on - strand, within ABIE53_000910 at 987.436 kb on - strand, within ABIE53_000910 at 987.436 kb on - strand, within ABIE53_000910 at 987.437 kb on + strand, within ABIE53_000910 at 987.437 kb on + strand, within ABIE53_000910 at 987.438 kb on - strand, within ABIE53_000910 at 987.438 kb on - strand, within ABIE53_000910 at 987.438 kb on - strand, within ABIE53_000910 at 987.519 kb on + strand, within ABIE53_000910 at 987.519 kb on + strand, within ABIE53_000910 at 987.520 kb on - strand, within ABIE53_000910 at 987.520 kb on - strand, within ABIE53_000910 at 987.520 kb on - strand, within ABIE53_000910 at 987.520 kb on - strand, within ABIE53_000910 at 987.565 kb on - strand, within ABIE53_000910 at 987.577 kb on - strand, within ABIE53_000910 at 987.577 kb on - strand, within ABIE53_000910 at 987.600 kb on + strand, within ABIE53_000910 at 987.600 kb on + strand, within ABIE53_000910 at 987.600 kb on + strand, within ABIE53_000910 at 987.600 kb on + strand, within ABIE53_000910 at 987.600 kb on + strand, within ABIE53_000910 at 987.601 kb on - strand, within ABIE53_000910 at 987.601 kb on - strand, within ABIE53_000910 at 987.601 kb on - strand, within ABIE53_000910 at 987.601 kb on - strand, within ABIE53_000910 at 987.601 kb on - strand, within ABIE53_000910 at 987.601 kb on - strand, within ABIE53_000910 at 987.601 kb on - strand, within ABIE53_000910 at 987.610 kb on + strand, within ABIE53_000910 at 987.610 kb on + strand, within ABIE53_000910 at 987.610 kb on + strand, within ABIE53_000910 at 987.611 kb on - strand, within ABIE53_000910 at 987.744 kb on + strand, within ABIE53_000910 at 987.744 kb on + strand, within ABIE53_000910 at 987.745 kb on - strand, within ABIE53_000910 at 987.745 kb on - strand, within ABIE53_000910 at 987.887 kb on - strand, within ABIE53_000910 at 987.887 kb on - strand, within ABIE53_000910 at 987.934 kb on - strand, within ABIE53_000910 at 987.934 kb on - strand, within ABIE53_000910 at 987.934 kb on - strand, within ABIE53_000910 at 987.934 kb on - strand, within ABIE53_000910 at 987.945 kb on + strand, within ABIE53_000910 at 988.065 kb on + strand at 988.065 kb on + strand at 988.065 kb on + strand at 988.065 kb on + strand at 988.065 kb on + strand at 988.065 kb on + strand at 988.066 kb on - strand at 988.066 kb on - strand at 988.066 kb on - strand at 988.066 kb on - strand at 988.066 kb on - strand at 988.135 kb on + strand at 988.136 kb on - strand at 988.253 kb on - strand at 988.463 kb on + strand, within ABIE53_000911 at 988.463 kb on + strand, within ABIE53_000911 at 988.464 kb on - strand, within ABIE53_000911 at 988.464 kb on - strand, within ABIE53_000911 at 988.464 kb on - strand, within ABIE53_000911 at 988.464 kb on - strand, within ABIE53_000911 at 988.464 kb on - strand, within ABIE53_000911 at 988.464 kb on - strand, within ABIE53_000911 at 988.464 kb on - strand, within ABIE53_000911 at 988.583 kb on + strand, within ABIE53_000911 at 988.584 kb on - strand, within ABIE53_000911 at 988.584 kb on - strand, within ABIE53_000911 at 988.584 kb on - strand, within ABIE53_000911 at 988.584 kb on - strand, within ABIE53_000911 at 988.584 kb on - strand, within ABIE53_000911 at 988.584 kb on - strand, within ABIE53_000911 at 988.584 kb on - strand, within ABIE53_000911 at 988.626 kb on - strand, within ABIE53_000911 at 988.681 kb on + strand, within ABIE53_000911 at 988.681 kb on + strand, within ABIE53_000911 at 988.682 kb on - strand, within ABIE53_000911 at 988.682 kb on - strand, within ABIE53_000911 at 988.710 kb on - strand, within ABIE53_000911 at 988.796 kb on + strand, within ABIE53_000911 at 988.796 kb on + strand, within ABIE53_000911 at 988.796 kb on + strand, within ABIE53_000911 at 988.796 kb on + strand, within ABIE53_000911 at 988.797 kb on - strand, within ABIE53_000911 at 988.797 kb on - strand, within ABIE53_000911 at 988.797 kb on - strand, within ABIE53_000911 at 988.797 kb on - strand, within ABIE53_000911 at 988.797 kb on - strand, within ABIE53_000911 at 988.797 kb on - strand, within ABIE53_000911 at 988.843 kb on + strand, within ABIE53_000911 at 988.843 kb on + strand, within ABIE53_000911 at 988.877 kb on + strand, within ABIE53_000911 at 988.877 kb on + strand, within ABIE53_000911 at 988.878 kb on - strand, within ABIE53_000911 at 988.878 kb on - strand, within ABIE53_000911 at 988.904 kb on + strand, within ABIE53_000911 at 988.905 kb on - strand, within ABIE53_000911 at 988.905 kb on - strand, within ABIE53_000911 at 989.063 kb on + strand, within ABIE53_000911 at 989.063 kb on + strand, within ABIE53_000911 at 989.063 kb on + strand, within ABIE53_000911 at 989.063 kb on + strand, within ABIE53_000911 at 989.063 kb on + strand, within ABIE53_000911 at 989.064 kb on - strand, within ABIE53_000911 at 989.064 kb on - strand, within ABIE53_000911 at 989.064 kb on - strand, within ABIE53_000911 at 989.120 kb on + strand, within ABIE53_000911 at 989.120 kb on + strand, within ABIE53_000911 at 989.120 kb on + strand, within ABIE53_000911 at 989.173 kb on + strand, within ABIE53_000911 at 989.174 kb on - strand, within ABIE53_000911 at 989.192 kb on + strand, within ABIE53_000911 at 989.193 kb on - strand, within ABIE53_000911 at 989.201 kb on + strand, within ABIE53_000911 at 989.202 kb on - strand, within ABIE53_000911 at 989.202 kb on - strand, within ABIE53_000911 at 989.315 kb on + strand, within ABIE53_000911 at 989.315 kb on + strand, within ABIE53_000911 at 989.316 kb on - strand, within ABIE53_000911 at 989.477 kb on + strand, within ABIE53_000911 at 989.525 kb on + strand, within ABIE53_000911 at 989.576 kb on + strand, within ABIE53_000911 at 989.576 kb on + strand, within ABIE53_000911 at 989.576 kb on + strand, within ABIE53_000911 at 989.577 kb on - strand, within ABIE53_000911 at 989.577 kb on - strand, within ABIE53_000911 at 989.577 kb on - strand, within ABIE53_000911 at 989.577 kb on - strand, within ABIE53_000911 at 989.577 kb on - strand, within ABIE53_000911 at 989.577 kb on - strand, within ABIE53_000911 at 989.579 kb on + strand, within ABIE53_000911 at 989.579 kb on + strand, within ABIE53_000911 at 989.579 kb on + strand, within ABIE53_000911 at 989.580 kb on - strand, within ABIE53_000911 at 989.580 kb on - strand, within ABIE53_000911 at 989.781 kb on - strand at 989.822 kb on + strand at 989.822 kb on + strand at 989.822 kb on + strand at 989.822 kb on + strand at 989.823 kb on - strand at 989.823 kb on - strand at 989.823 kb on - strand at 989.823 kb on - strand at 989.863 kb on + strand at 989.864 kb on - strand at 990.049 kb on + strand at 990.050 kb on - strand at 990.050 kb on - strand at 990.050 kb on - strand at 990.050 kb on - strand at 990.050 kb on - strand at 990.050 kb on - strand at 990.056 kb on - strand at 990.239 kb on + strand, within ABIE53_000912 at 990.239 kb on + strand, within ABIE53_000912 at 990.239 kb on + strand, within ABIE53_000912 at 990.239 kb on + strand, within ABIE53_000912 at 990.240 kb on - strand, within ABIE53_000912 at 990.240 kb on - strand, within ABIE53_000912 at 990.524 kb on - strand, within ABIE53_000912 at 990.524 kb on - strand, within ABIE53_000912 at 990.524 kb on - strand, within ABIE53_000912 at 990.524 kb on - strand, within ABIE53_000912 at 990.537 kb on - strand, within ABIE53_000912 at 990.818 kb on + strand, within ABIE53_000912 at 990.818 kb on + strand, within ABIE53_000912 at 990.818 kb on + strand, within ABIE53_000912 at 990.819 kb on - strand, within ABIE53_000912 at 990.819 kb on - strand, within ABIE53_000912 at 990.819 kb on - strand, within ABIE53_000912
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with caffeic 1 mM remove 987,435 + ABIE53_000910 0.59 -0.9 987,435 + ABIE53_000910 0.59 +0.9 987,435 + ABIE53_000910 0.59 +0.1 987,435 + ABIE53_000910 0.59 -0.7 987,436 - ABIE53_000910 0.59 -1.8 987,436 - ABIE53_000910 0.59 -0.1 987,436 - ABIE53_000910 0.59 -0.1 987,436 - ABIE53_000910 0.59 +0.1 987,437 + ABIE53_000910 0.59 -1.4 987,437 + ABIE53_000910 0.59 -1.6 987,438 - ABIE53_000910 0.59 +3.7 987,438 - ABIE53_000910 0.59 -0.7 987,438 - ABIE53_000910 0.59 -2.5 987,519 + ABIE53_000910 0.64 +0.7 987,519 + ABIE53_000910 0.64 -0.2 987,520 - ABIE53_000910 0.64 -0.6 987,520 - ABIE53_000910 0.64 +0.0 987,520 - ABIE53_000910 0.64 -1.1 987,520 - ABIE53_000910 0.64 +1.9 987,565 - ABIE53_000910 0.67 -2.5 987,577 - ABIE53_000910 0.67 -0.7 987,577 - ABIE53_000910 0.67 +0.2 987,600 + ABIE53_000910 0.69 +0.9 987,600 + ABIE53_000910 0.69 +0.7 987,600 + ABIE53_000910 0.69 -0.9 987,600 + ABIE53_000910 0.69 -0.9 987,600 + ABIE53_000910 0.69 +0.9 987,601 - ABIE53_000910 0.69 +1.1 987,601 - ABIE53_000910 0.69 +1.9 987,601 - ABIE53_000910 0.69 -1.0 987,601 - ABIE53_000910 0.69 -0.4 987,601 - ABIE53_000910 0.69 -1.1 987,601 - ABIE53_000910 0.69 +0.5 987,601 - ABIE53_000910 0.69 +0.1 987,610 + ABIE53_000910 0.69 +1.3 987,610 + ABIE53_000910 0.69 -0.7 987,610 + ABIE53_000910 0.69 +0.2 987,611 - ABIE53_000910 0.69 -0.7 987,744 + ABIE53_000910 0.77 -0.4 987,744 + ABIE53_000910 0.77 -2.1 987,745 - ABIE53_000910 0.77 -0.1 987,745 - ABIE53_000910 0.77 +1.5 987,887 - ABIE53_000910 0.86 -0.4 987,887 - ABIE53_000910 0.86 +1.7 987,934 - ABIE53_000910 0.89 +2.7 987,934 - ABIE53_000910 0.89 -0.4 987,934 - ABIE53_000910 0.89 +0.3 987,934 - ABIE53_000910 0.89 +0.2 987,945 + ABIE53_000910 0.89 -1.3 988,065 + +1.9 988,065 + -0.3 988,065 + -0.6 988,065 + -1.1 988,065 + -1.5 988,065 + -0.4 988,066 - -2.9 988,066 - +2.1 988,066 - -2.0 988,066 - +1.0 988,066 - -0.3 988,135 + -0.2 988,136 - +0.3 988,253 - +0.3 988,463 + ABIE53_000911 0.15 -0.7 988,463 + ABIE53_000911 0.15 +0.1 988,464 - ABIE53_000911 0.15 +0.3 988,464 - ABIE53_000911 0.15 -4.2 988,464 - ABIE53_000911 0.15 -0.1 988,464 - ABIE53_000911 0.15 +0.7 988,464 - ABIE53_000911 0.15 -0.4 988,464 - ABIE53_000911 0.15 -0.3 988,464 - ABIE53_000911 0.15 +1.3 988,583 + ABIE53_000911 0.22 -1.5 988,584 - ABIE53_000911 0.22 +0.9 988,584 - ABIE53_000911 0.22 -1.3 988,584 - ABIE53_000911 0.22 +0.5 988,584 - ABIE53_000911 0.22 -1.8 988,584 - ABIE53_000911 0.22 -0.4 988,584 - ABIE53_000911 0.22 +1.9 988,584 - ABIE53_000911 0.22 +0.9 988,626 - ABIE53_000911 0.25 -0.2 988,681 + ABIE53_000911 0.28 +1.0 988,681 + ABIE53_000911 0.28 -0.1 988,682 - ABIE53_000911 0.28 +0.4 988,682 - ABIE53_000911 0.28 -2.1 988,710 - ABIE53_000911 0.30 +0.0 988,796 + ABIE53_000911 0.35 +1.7 988,796 + ABIE53_000911 0.35 -1.1 988,796 + ABIE53_000911 0.35 +2.2 988,796 + ABIE53_000911 0.35 +0.4 988,797 - ABIE53_000911 0.35 -1.7 988,797 - ABIE53_000911 0.35 -0.8 988,797 - ABIE53_000911 0.35 +0.2 988,797 - ABIE53_000911 0.35 +0.9 988,797 - ABIE53_000911 0.35 -2.1 988,797 - ABIE53_000911 0.35 -1.1 988,843 + ABIE53_000911 0.38 -0.9 988,843 + ABIE53_000911 0.38 +1.2 988,877 + ABIE53_000911 0.40 -0.1 988,877 + ABIE53_000911 0.40 -2.1 988,878 - ABIE53_000911 0.40 -2.4 988,878 - ABIE53_000911 0.40 +0.9 988,904 + ABIE53_000911 0.41 +1.1 988,905 - ABIE53_000911 0.41 -0.1 988,905 - ABIE53_000911 0.41 -0.7 989,063 + ABIE53_000911 0.51 -1.9 989,063 + ABIE53_000911 0.51 -0.9 989,063 + ABIE53_000911 0.51 -0.4 989,063 + ABIE53_000911 0.51 +0.2 989,063 + ABIE53_000911 0.51 +0.7 989,064 - ABIE53_000911 0.51 +1.6 989,064 - ABIE53_000911 0.51 -0.4 989,064 - ABIE53_000911 0.51 -1.7 989,120 + ABIE53_000911 0.54 -0.2 989,120 + ABIE53_000911 0.54 -1.8 989,120 + ABIE53_000911 0.54 +0.6 989,173 + ABIE53_000911 0.57 -0.7 989,174 - ABIE53_000911 0.57 -1.5 989,192 + ABIE53_000911 0.59 +0.4 989,193 - ABIE53_000911 0.59 +0.3 989,201 + ABIE53_000911 0.59 +0.5 989,202 - ABIE53_000911 0.59 -1.1 989,202 - ABIE53_000911 0.59 +2.3 989,315 + ABIE53_000911 0.66 +0.6 989,315 + ABIE53_000911 0.66 +0.9 989,316 - ABIE53_000911 0.66 -1.3 989,477 + ABIE53_000911 0.76 +0.8 989,525 + ABIE53_000911 0.79 -3.1 989,576 + ABIE53_000911 0.82 -0.8 989,576 + ABIE53_000911 0.82 +2.3 989,576 + ABIE53_000911 0.82 +1.3 989,577 - ABIE53_000911 0.82 -1.2 989,577 - ABIE53_000911 0.82 +2.1 989,577 - ABIE53_000911 0.82 -0.6 989,577 - ABIE53_000911 0.82 -0.9 989,577 - ABIE53_000911 0.82 +0.1 989,577 - ABIE53_000911 0.82 -1.4 989,579 + ABIE53_000911 0.82 -1.9 989,579 + ABIE53_000911 0.82 -0.7 989,579 + ABIE53_000911 0.82 -2.4 989,580 - ABIE53_000911 0.82 -1.4 989,580 - ABIE53_000911 0.82 +0.7 989,781 - +0.4 989,822 + +1.6 989,822 + -0.1 989,822 + -0.1 989,822 + -0.0 989,823 - +1.2 989,823 - -0.4 989,823 - -0.5 989,823 - +0.6 989,863 + -1.4 989,864 - -3.4 990,049 + -1.4 990,050 - -1.3 990,050 - +0.2 990,050 - -1.4 990,050 - -0.0 990,050 - -0.3 990,050 - -0.3 990,056 - +0.0 990,239 + ABIE53_000912 0.17 -0.7 990,239 + ABIE53_000912 0.17 -0.9 990,239 + ABIE53_000912 0.17 +1.9 990,239 + ABIE53_000912 0.17 +0.9 990,240 - ABIE53_000912 0.17 -0.9 990,240 - ABIE53_000912 0.17 -2.1 990,524 - ABIE53_000912 0.41 -0.4 990,524 - ABIE53_000912 0.41 -0.7 990,524 - ABIE53_000912 0.41 -1.0 990,524 - ABIE53_000912 0.41 +0.1 990,537 - ABIE53_000912 0.42 +0.3 990,818 + ABIE53_000912 0.65 +0.2 990,818 + ABIE53_000912 0.65 -0.1 990,818 + ABIE53_000912 0.65 +0.3 990,819 - ABIE53_000912 0.65 +2.0 990,819 - ABIE53_000912 0.65 -1.4 990,819 - ABIE53_000912 0.65 -0.5
Or see this region's nucleotide sequence