Strain Fitness in Shewanella oneidensis MR-1 around SO4414

Experiment: Survival in PBS at 22C, experiment1, 13 day

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO4413 and SO4414 are separated by 4 nucleotidesSO4414 and dcuB are separated by 280 nucleotides SO4413: SO4413 - hypothetical kynureninase (NCBI ptt file), at 4,606,608 to 4,607,744 SO4413 SO4414: SO4414 - conserved domain protein (NCBI ptt file), at 4,607,749 to 4,608,927 SO4414 SO4417: dcuB - anaerobic C4-dicarboxylate membrane transporter (NCBI ptt file), at 4,609,208 to 4,610,551 dcuB Position (kb) 4607 4608 4609Strain fitness (log2 ratio) -2 -1 0 1at 4606.809 kb on - strand, within SO4413at 4606.827 kb on + strand, within SO4413at 4606.845 kb on - strand, within SO4413at 4606.855 kb on - strand, within SO4413at 4606.855 kb on - strand, within SO4413at 4606.917 kb on + strand, within SO4413at 4606.963 kb on + strand, within SO4413at 4607.108 kb on - strand, within SO4413at 4607.180 kb on + strand, within SO4413at 4607.252 kb on + strand, within SO4413at 4607.293 kb on + strand, within SO4413at 4607.298 kb on + strand, within SO4413at 4607.330 kb on + strand, within SO4413at 4607.330 kb on + strand, within SO4413at 4607.338 kb on - strand, within SO4413at 4607.421 kb on + strand, within SO4413at 4607.603 kb on - strand, within SO4413at 4607.604 kb on - strand, within SO4413at 4607.608 kb on + strand, within SO4413at 4607.904 kb on + strand, within SO4414at 4607.912 kb on - strand, within SO4414at 4607.914 kb on + strand, within SO4414at 4607.927 kb on + strand, within SO4414at 4607.941 kb on + strand, within SO4414at 4607.962 kb on + strand, within SO4414at 4608.011 kb on - strand, within SO4414at 4608.030 kb on + strand, within SO4414at 4608.033 kb on - strand, within SO4414at 4608.033 kb on - strand, within SO4414at 4608.040 kb on + strand, within SO4414at 4608.040 kb on + strand, within SO4414at 4608.172 kb on + strand, within SO4414at 4608.206 kb on - strand, within SO4414at 4608.240 kb on + strand, within SO4414at 4608.240 kb on + strand, within SO4414at 4608.248 kb on - strand, within SO4414at 4608.411 kb on - strand, within SO4414at 4608.452 kb on - strand, within SO4414at 4608.496 kb on + strand, within SO4414at 4608.529 kb on + strand, within SO4414at 4608.568 kb on + strand, within SO4414at 4608.591 kb on - strand, within SO4414at 4608.608 kb on + strand, within SO4414at 4608.618 kb on + strand, within SO4414at 4608.671 kb on + strand, within SO4414at 4608.671 kb on + strand, within SO4414at 4608.671 kb on + strand, within SO4414at 4608.679 kb on - strand, within SO4414at 4608.679 kb on - strand, within SO4414at 4608.679 kb on - strand, within SO4414at 4608.679 kb on - strand, within SO4414at 4608.679 kb on - strand, within SO4414at 4608.694 kb on - strand, within SO4414at 4608.720 kb on - strand, within SO4414at 4608.728 kb on + strand, within SO4414at 4608.773 kb on + strand, within SO4414at 4608.785 kb on + strand, within SO4414at 4608.792 kb on + strand, within SO4414at 4608.792 kb on + strand, within SO4414at 4608.797 kb on + strand, within SO4414at 4608.805 kb on - strand, within SO4414at 4608.821 kb on - strandat 4608.913 kb on - strandat 4608.913 kb on - strandat 4609.061 kb on + strandat 4609.195 kb on - strandat 4609.257 kb on + strandat 4609.257 kb on + strandat 4609.282 kb on - strandat 4609.283 kb on - strandat 4609.349 kb on + strand, within dcuBat 4609.358 kb on + strand, within dcuBat 4609.402 kb on - strand, within dcuBat 4609.413 kb on + strand, within dcuBat 4609.413 kb on + strand, within dcuBat 4609.413 kb on + strand, within dcuBat 4609.413 kb on + strand, within dcuBat 4609.421 kb on - strand, within dcuBat 4609.421 kb on - strand, within dcuBat 4609.421 kb on - strand, within dcuBat 4609.421 kb on - strand, within dcuBat 4609.484 kb on + strand, within dcuBat 4609.492 kb on - strand, within dcuBat 4609.531 kb on + strand, within dcuBat 4609.594 kb on + strand, within dcuBat 4609.694 kb on + strand, within dcuBat 4609.750 kb on + strand, within dcuBat 4609.751 kb on - strand, within dcuBat 4609.758 kb on - strand, within dcuBat 4609.762 kb on + strand, within dcuBat 4609.767 kb on + strand, within dcuBat 4609.783 kb on - strand, within dcuBat 4609.917 kb on - strand, within dcuB

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival in PBS at 22C, experiment1, 13 day
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4,606,809 - SO4413 0.18 -0.1
4,606,827 + SO4413 0.19 +1.5
4,606,845 - SO4413 0.21 -0.0
4,606,855 - SO4413 0.22 +0.2
4,606,855 - SO4413 0.22 -1.4
4,606,917 + SO4413 0.27 +0.3
4,606,963 + SO4413 0.31 -0.5
4,607,108 - SO4413 0.44 -0.6
4,607,180 + SO4413 0.50 -1.6
4,607,252 + SO4413 0.57 -0.0
4,607,293 + SO4413 0.60 -0.4
4,607,298 + SO4413 0.61 +0.4
4,607,330 + SO4413 0.64 -1.2
4,607,330 + SO4413 0.64 +0.2
4,607,338 - SO4413 0.64 -0.8
4,607,421 + SO4413 0.72 +0.3
4,607,603 - SO4413 0.88 -0.6
4,607,604 - SO4413 0.88 -0.3
4,607,608 + SO4413 0.88 +0.1
4,607,904 + SO4414 0.13 -1.1
4,607,912 - SO4414 0.14 -1.7
4,607,914 + SO4414 0.14 -0.7
4,607,927 + SO4414 0.15 -0.6
4,607,941 + SO4414 0.16 -0.5
4,607,962 + SO4414 0.18 -2.2
4,608,011 - SO4414 0.22 +0.3
4,608,030 + SO4414 0.24 -1.8
4,608,033 - SO4414 0.24 -0.8
4,608,033 - SO4414 0.24 -0.4
4,608,040 + SO4414 0.25 +0.8
4,608,040 + SO4414 0.25 -0.8
4,608,172 + SO4414 0.36 +0.3
4,608,206 - SO4414 0.39 -0.1
4,608,240 + SO4414 0.42 +1.0
4,608,240 + SO4414 0.42 -1.6
4,608,248 - SO4414 0.42 +0.2
4,608,411 - SO4414 0.56 -2.2
4,608,452 - SO4414 0.60 -1.5
4,608,496 + SO4414 0.63 -0.4
4,608,529 + SO4414 0.66 -0.1
4,608,568 + SO4414 0.69 -1.0
4,608,591 - SO4414 0.71 -0.6
4,608,608 + SO4414 0.73 -1.4
4,608,618 + SO4414 0.74 -1.5
4,608,671 + SO4414 0.78 -0.0
4,608,671 + SO4414 0.78 -1.1
4,608,671 + SO4414 0.78 -1.3
4,608,679 - SO4414 0.79 -0.2
4,608,679 - SO4414 0.79 -1.6
4,608,679 - SO4414 0.79 -1.5
4,608,679 - SO4414 0.79 -0.5
4,608,679 - SO4414 0.79 +0.3
4,608,694 - SO4414 0.80 +0.3
4,608,720 - SO4414 0.82 -1.2
4,608,728 + SO4414 0.83 -1.8
4,608,773 + SO4414 0.87 -0.3
4,608,785 + SO4414 0.88 -1.3
4,608,792 + SO4414 0.88 -2.2
4,608,792 + SO4414 0.88 -0.4
4,608,797 + SO4414 0.89 -1.3
4,608,805 - SO4414 0.90 +0.1
4,608,821 - -0.9
4,608,913 - -0.6
4,608,913 - -1.0
4,609,061 + -0.1
4,609,195 - -0.9
4,609,257 + +0.2
4,609,257 + -0.1
4,609,282 - +0.7
4,609,283 - +0.6
4,609,349 + dcuB SO4417 0.10 -1.3
4,609,358 + dcuB SO4417 0.11 +0.5
4,609,402 - dcuB SO4417 0.14 -0.3
4,609,413 + dcuB SO4417 0.15 -1.4
4,609,413 + dcuB SO4417 0.15 -0.6
4,609,413 + dcuB SO4417 0.15 -0.6
4,609,413 + dcuB SO4417 0.15 -0.6
4,609,421 - dcuB SO4417 0.16 -0.6
4,609,421 - dcuB SO4417 0.16 +1.4
4,609,421 - dcuB SO4417 0.16 +0.1
4,609,421 - dcuB SO4417 0.16 -0.1
4,609,484 + dcuB SO4417 0.21 -1.0
4,609,492 - dcuB SO4417 0.21 +1.4
4,609,531 + dcuB SO4417 0.24 -2.0
4,609,594 + dcuB SO4417 0.29 -0.2
4,609,694 + dcuB SO4417 0.36 -0.8
4,609,750 + dcuB SO4417 0.40 -1.0
4,609,751 - dcuB SO4417 0.40 -0.6
4,609,758 - dcuB SO4417 0.41 +1.4
4,609,762 + dcuB SO4417 0.41 -0.3
4,609,767 + dcuB SO4417 0.42 -1.3
4,609,783 - dcuB SO4417 0.43 +0.1
4,609,917 - dcuB SO4417 0.53 -0.2

Or see this region's nucleotide sequence