Strain Fitness in Shewanella oneidensis MR-1 around SO3894

Experiment: Survival in PBS at 22C, experiment1, 13 day

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSO3892 and SO3894 are separated by 265 nucleotidesSO3894 and SO3895 are separated by 74 nucleotides SO3892: SO3892 - hypothetical protein (NCBI ptt file), at 4,037,742 to 4,038,257 SO3892 SO3894: SO3894 - sensor histidine kinase (NCBI ptt file), at 4,038,523 to 4,040,154 SO3894 SO3895: SO3895 - HesA/MoeB/ThiF family protein (NCBI ptt file), at 4,040,229 to 4,041,032 SO3895 Position (kb) 4038 4039 4040 4041Strain fitness (log2 ratio) -2 -1 0 1 2at 4037.552 kb on + strandat 4037.560 kb on - strandat 4037.572 kb on + strandat 4037.676 kb on + strandat 4037.684 kb on - strandat 4037.684 kb on - strandat 4037.684 kb on - strandat 4037.734 kb on + strandat 4037.734 kb on + strandat 4037.741 kb on - strandat 4037.747 kb on - strandat 4037.768 kb on - strandat 4037.773 kb on - strandat 4037.829 kb on + strand, within SO3892at 4037.839 kb on + strand, within SO3892at 4037.844 kb on + strand, within SO3892at 4037.844 kb on + strand, within SO3892at 4037.844 kb on + strand, within SO3892at 4037.844 kb on + strand, within SO3892at 4037.852 kb on - strand, within SO3892at 4037.852 kb on - strand, within SO3892at 4037.852 kb on - strand, within SO3892at 4037.852 kb on - strand, within SO3892at 4037.852 kb on - strand, within SO3892at 4037.852 kb on - strand, within SO3892at 4037.925 kb on - strand, within SO3892at 4037.925 kb on - strand, within SO3892at 4037.934 kb on + strand, within SO3892at 4037.988 kb on - strand, within SO3892at 4038.061 kb on + strand, within SO3892at 4038.061 kb on + strand, within SO3892at 4038.061 kb on + strand, within SO3892at 4038.067 kb on + strand, within SO3892at 4038.067 kb on + strand, within SO3892at 4038.069 kb on - strand, within SO3892at 4038.075 kb on - strand, within SO3892at 4038.075 kb on - strand, within SO3892at 4038.075 kb on - strand, within SO3892at 4038.082 kb on - strand, within SO3892at 4038.211 kb on + strandat 4038.219 kb on - strandat 4038.220 kb on + strandat 4038.240 kb on - strandat 4038.283 kb on - strandat 4038.283 kb on - strandat 4038.283 kb on - strandat 4038.283 kb on - strandat 4038.308 kb on - strandat 4038.313 kb on + strandat 4038.316 kb on - strandat 4038.355 kb on + strandat 4038.362 kb on - strandat 4038.473 kb on + strandat 4038.478 kb on + strandat 4038.568 kb on + strandat 4038.568 kb on + strandat 4038.568 kb on + strandat 4038.568 kb on + strandat 4038.568 kb on + strandat 4038.568 kb on + strandat 4038.568 kb on + strandat 4038.576 kb on - strandat 4038.586 kb on + strandat 4038.586 kb on + strandat 4038.594 kb on - strandat 4038.599 kb on + strandat 4038.639 kb on + strandat 4038.698 kb on + strand, within SO3894at 4038.744 kb on + strand, within SO3894at 4038.752 kb on - strand, within SO3894at 4038.754 kb on + strand, within SO3894at 4038.764 kb on + strand, within SO3894at 4038.764 kb on + strand, within SO3894at 4038.772 kb on - strand, within SO3894at 4038.827 kb on - strand, within SO3894at 4038.900 kb on + strand, within SO3894at 4038.900 kb on + strand, within SO3894at 4038.914 kb on + strand, within SO3894at 4038.914 kb on + strand, within SO3894at 4038.922 kb on - strand, within SO3894at 4038.949 kb on - strand, within SO3894at 4038.975 kb on - strand, within SO3894at 4039.094 kb on - strand, within SO3894at 4039.183 kb on + strand, within SO3894at 4039.189 kb on + strand, within SO3894at 4039.207 kb on - strand, within SO3894at 4039.236 kb on - strand, within SO3894at 4039.236 kb on - strand, within SO3894at 4039.278 kb on + strand, within SO3894at 4039.280 kb on + strand, within SO3894at 4039.343 kb on - strand, within SO3894at 4039.345 kb on + strand, within SO3894at 4039.345 kb on + strand, within SO3894at 4039.345 kb on + strand, within SO3894at 4039.345 kb on + strand, within SO3894at 4039.345 kb on + strand, within SO3894at 4039.345 kb on + strand, within SO3894at 4039.345 kb on + strand, within SO3894at 4039.345 kb on + strand, within SO3894at 4039.345 kb on + strand, within SO3894at 4039.345 kb on + strand, within SO3894at 4039.345 kb on + strand, within SO3894at 4039.353 kb on - strand, within SO3894at 4039.353 kb on - strand, within SO3894at 4039.353 kb on - strand, within SO3894at 4039.353 kb on - strand, within SO3894at 4039.355 kb on - strand, within SO3894at 4039.373 kb on - strand, within SO3894at 4039.373 kb on - strand, within SO3894at 4039.373 kb on - strand, within SO3894at 4039.373 kb on - strand, within SO3894at 4039.410 kb on - strand, within SO3894at 4039.471 kb on + strand, within SO3894at 4039.502 kb on - strand, within SO3894at 4039.502 kb on - strand, within SO3894at 4039.502 kb on - strand, within SO3894at 4039.517 kb on + strand, within SO3894at 4039.553 kb on + strand, within SO3894at 4039.561 kb on - strandat 4039.573 kb on - strand, within SO3894at 4039.573 kb on - strand, within SO3894at 4039.737 kb on - strand, within SO3894at 4039.754 kb on - strand, within SO3894at 4039.756 kb on + strand, within SO3894at 4039.774 kb on + strand, within SO3894at 4039.782 kb on - strand, within SO3894at 4039.812 kb on + strand, within SO3894at 4039.820 kb on - strand, within SO3894at 4039.842 kb on - strand, within SO3894at 4039.868 kb on + strand, within SO3894at 4039.939 kb on + strand, within SO3894at 4039.993 kb on + strandat 4039.993 kb on + strandat 4039.993 kb on + strandat 4039.993 kb on + strandat 4040.001 kb on - strandat 4040.001 kb on - strandat 4040.001 kb on - strandat 4040.001 kb on - strandat 4040.001 kb on - strandat 4040.012 kb on + strandat 4040.051 kb on + strandat 4040.059 kb on - strandat 4040.083 kb on - strandat 4040.107 kb on - strandat 4040.134 kb on + strandat 4040.136 kb on + strandat 4040.142 kb on - strandat 4040.142 kb on - strandat 4040.142 kb on - strandat 4040.269 kb on - strandat 4040.334 kb on - strand, within SO3895at 4040.366 kb on - strand, within SO3895at 4040.397 kb on + strand, within SO3895at 4040.543 kb on + strand, within SO3895at 4040.611 kb on + strand, within SO3895at 4040.874 kb on + strand, within SO3895at 4040.884 kb on + strand, within SO3895at 4040.916 kb on + strand, within SO3895at 4040.962 kb on + strandat 4040.975 kb on + strandat 4041.042 kb on + strandat 4041.043 kb on - strandat 4041.065 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Survival in PBS at 22C, experiment1, 13 day
remove
4,037,552 + -0.2
4,037,560 - +0.5
4,037,572 + -1.3
4,037,676 + -0.8
4,037,684 - -0.7
4,037,684 - -0.2
4,037,684 - +0.9
4,037,734 + +0.5
4,037,734 + +2.5
4,037,741 - +0.1
4,037,747 - +0.1
4,037,768 - +0.1
4,037,773 - -0.0
4,037,829 + SO3892 0.17 -1.0
4,037,839 + SO3892 0.19 +1.1
4,037,844 + SO3892 0.20 +1.0
4,037,844 + SO3892 0.20 +0.0
4,037,844 + SO3892 0.20 -0.0
4,037,844 + SO3892 0.20 -0.3
4,037,852 - SO3892 0.21 -0.6
4,037,852 - SO3892 0.21 +0.1
4,037,852 - SO3892 0.21 +0.9
4,037,852 - SO3892 0.21 +1.3
4,037,852 - SO3892 0.21 -0.5
4,037,852 - SO3892 0.21 -0.7
4,037,925 - SO3892 0.35 -1.6
4,037,925 - SO3892 0.35 -1.0
4,037,934 + SO3892 0.37 +1.2
4,037,988 - SO3892 0.48 +0.9
4,038,061 + SO3892 0.62 +0.4
4,038,061 + SO3892 0.62 +0.2
4,038,061 + SO3892 0.62 +1.1
4,038,067 + SO3892 0.63 -0.0
4,038,067 + SO3892 0.63 -0.4
4,038,069 - SO3892 0.63 -0.7
4,038,075 - SO3892 0.65 +0.7
4,038,075 - SO3892 0.65 -0.7
4,038,075 - SO3892 0.65 -0.3
4,038,082 - SO3892 0.66 +0.1
4,038,211 + -1.0
4,038,219 - -0.1
4,038,220 + -0.7
4,038,240 - +0.4
4,038,283 - -0.3
4,038,283 - +0.5
4,038,283 - -2.4
4,038,283 - +1.3
4,038,308 - +0.5
4,038,313 + -0.1
4,038,316 - +0.9
4,038,355 + +1.0
4,038,362 - +0.1
4,038,473 + -0.5
4,038,478 + -0.2
4,038,568 + +0.1
4,038,568 + +0.7
4,038,568 + +0.5
4,038,568 + +1.2
4,038,568 + +0.4
4,038,568 + -0.3
4,038,568 + -0.4
4,038,576 - -1.2
4,038,586 + +0.7
4,038,586 + -0.3
4,038,594 - +0.7
4,038,599 + +0.8
4,038,639 + -1.2
4,038,698 + SO3894 0.11 +0.3
4,038,744 + SO3894 0.14 +0.7
4,038,752 - SO3894 0.14 -0.1
4,038,754 + SO3894 0.14 +1.3
4,038,764 + SO3894 0.15 +0.5
4,038,764 + SO3894 0.15 +0.5
4,038,772 - SO3894 0.15 +1.2
4,038,827 - SO3894 0.19 +0.4
4,038,900 + SO3894 0.23 +0.0
4,038,900 + SO3894 0.23 +0.1
4,038,914 + SO3894 0.24 -0.1
4,038,914 + SO3894 0.24 +0.0
4,038,922 - SO3894 0.24 +0.3
4,038,949 - SO3894 0.26 +0.6
4,038,975 - SO3894 0.28 +1.5
4,039,094 - SO3894 0.35 -0.1
4,039,183 + SO3894 0.40 +0.5
4,039,189 + SO3894 0.41 +1.1
4,039,207 - SO3894 0.42 -1.4
4,039,236 - SO3894 0.44 +0.5
4,039,236 - SO3894 0.44 +0.2
4,039,278 + SO3894 0.46 +1.0
4,039,280 + SO3894 0.46 -0.9
4,039,343 - SO3894 0.50 +0.2
4,039,345 + SO3894 0.50 +0.8
4,039,345 + SO3894 0.50 -0.5
4,039,345 + SO3894 0.50 -0.3
4,039,345 + SO3894 0.50 +0.8
4,039,345 + SO3894 0.50 +1.9
4,039,345 + SO3894 0.50 +0.2
4,039,345 + SO3894 0.50 +1.3
4,039,345 + SO3894 0.50 -1.6
4,039,345 + SO3894 0.50 +0.7
4,039,345 + SO3894 0.50 -0.6
4,039,345 + SO3894 0.50 -1.0
4,039,353 - SO3894 0.51 +2.2
4,039,353 - SO3894 0.51 -0.6
4,039,353 - SO3894 0.51 -0.3
4,039,353 - SO3894 0.51 -0.1
4,039,355 - SO3894 0.51 +0.3
4,039,373 - SO3894 0.52 +0.4
4,039,373 - SO3894 0.52 -0.2
4,039,373 - SO3894 0.52 -0.1
4,039,373 - SO3894 0.52 +1.0
4,039,410 - SO3894 0.54 +0.1
4,039,471 + SO3894 0.58 -1.3
4,039,502 - SO3894 0.60 -0.2
4,039,502 - SO3894 0.60 +0.2
4,039,502 - SO3894 0.60 -2.1
4,039,517 + SO3894 0.61 -1.2
4,039,553 + SO3894 0.63 +1.9
4,039,561 - -0.1
4,039,573 - SO3894 0.64 +0.5
4,039,573 - SO3894 0.64 +2.0
4,039,737 - SO3894 0.74 -0.2
4,039,754 - SO3894 0.75 -2.3
4,039,756 + SO3894 0.76 -2.0
4,039,774 + SO3894 0.77 +1.3
4,039,782 - SO3894 0.77 +1.0
4,039,812 + SO3894 0.79 +1.1
4,039,820 - SO3894 0.79 -2.0
4,039,842 - SO3894 0.81 -1.5
4,039,868 + SO3894 0.82 -0.4
4,039,939 + SO3894 0.87 +0.4
4,039,993 + +0.4
4,039,993 + +0.8
4,039,993 + -0.7
4,039,993 + +1.9
4,040,001 - +0.3
4,040,001 - +0.7
4,040,001 - +0.8
4,040,001 - +1.3
4,040,001 - -0.8
4,040,012 + +0.3
4,040,051 + +1.3
4,040,059 - +0.3
4,040,083 - -0.2
4,040,107 - -0.3
4,040,134 + -0.9
4,040,136 + -0.8
4,040,142 - -0.4
4,040,142 - +0.4
4,040,142 - +0.7
4,040,269 - -0.7
4,040,334 - SO3895 0.13 -0.3
4,040,366 - SO3895 0.17 +0.1
4,040,397 + SO3895 0.21 -0.1
4,040,543 + SO3895 0.39 -1.8
4,040,611 + SO3895 0.48 +0.2
4,040,874 + SO3895 0.80 +0.3
4,040,884 + SO3895 0.81 -0.9
4,040,916 + SO3895 0.85 -2.3
4,040,962 + -0.3
4,040,975 + -1.0
4,041,042 + +0.7
4,041,043 - +2.3
4,041,065 + +0.2

Or see this region's nucleotide sequence