Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4065

Experiment: Varel_Bryant_medium_Glucose with Bile salts 0.125 mg/mL; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Bile salts 0.125 mg/mL; pH 5.5
5,297,772	+		BT4064	0.27	+1.0
5,297,784	+		BT4064	0.29	-1.7
5,297,785	-		BT4064	0.29	-0.3
5,297,818	+		BT4064	0.32	-0.1
5,297,901	+		BT4064	0.39	-0.3
5,297,929	+		BT4064	0.42	-0.8
5,297,944	+		BT4064	0.43	-2.5
5,298,043	-		BT4064	0.53	+0.9
5,298,098	-		BT4064	0.58	-1.9
5,298,100	+		BT4064	0.58	-0.6
5,298,121	+		BT4064	0.60	-1.8
5,298,122	-		BT4064	0.60	-2.3
5,298,172	+		BT4064	0.65	-0.4
5,298,196	+		BT4064	0.67	-0.2
5,298,261	+		BT4064	0.73	-2.5
5,298,262	-		BT4064	0.73	-1.2
5,298,318	-		BT4064	0.78	-0.3
5,298,337	+		BT4064	0.80	-1.7
5,298,430	+		BT4064	0.88	+1.3
5,298,435	+		BT4064	0.89	+2.8
5,298,435	+		BT4064	0.89	-3.5
5,298,436	-		BT4064	0.89	+0.3
5,298,436	-		BT4064	0.89	-0.2
5,298,438	-		BT4064	0.89	-0.7
5,298,465	-				+0.3
5,298,475	+				-1.5
5,298,553	+				-1.4
5,298,554	-				-2.2
5,298,563	-				-0.7
5,298,587	+				-0.4
5,298,590	+				-1.7
5,298,612	+				+0.2
5,298,651	+				-1.7
5,298,655	+				-1.2
5,298,658	+				-2.7
5,298,871	+		BT4065	0.12	-1.2
5,298,884	+		BT4065	0.13	-0.1
5,298,996	+		BT4065	0.20	-0.9
5,298,996	+		BT4065	0.20	-0.5
5,298,996	+		BT4065	0.20	-0.8
5,298,996	+		BT4065	0.20	-1.5
5,299,007	+		BT4065	0.20	-0.8
5,299,064	+		BT4065	0.24	-0.5
5,299,066	+		BT4065	0.24	-0.3
5,299,090	+		BT4065	0.25	-1.1
5,299,162	+		BT4065	0.30	-1.1
5,299,182	+		BT4065	0.31	-0.8
5,299,213	+		BT4065	0.33	+0.9
5,299,236	+		BT4065	0.34	-1.3
5,299,245	+		BT4065	0.35	+0.2
5,299,245	+		BT4065	0.35	-1.2
5,299,247	+		BT4065	0.35	-0.2
5,299,254	+		BT4065	0.36	-0.4
5,299,300	+		BT4065	0.38	-0.4
5,299,319	+		BT4065	0.40	-0.6
5,299,483	-		BT4065	0.50	-0.1
5,299,490	+		BT4065	0.50	-0.2
5,299,539	+		BT4065	0.53	+0.3
5,299,540	-		BT4065	0.53	+0.3
5,299,614	+		BT4065	0.58	-1.1
5,299,614	+		BT4065	0.58	-1.1
5,299,650	+		BT4065	0.60	-2.1
5,299,715	-		BT4065	0.64	+0.1
5,299,757	+		BT4065	0.67	+0.2
5,299,757	+		BT4065	0.67	-0.5
5,299,857	+		BT4065	0.73	-0.7
5,299,857	+		BT4065	0.73	-0.7
5,299,887	+				+0.5
5,299,887	+		BT4065	0.75	+1.4
5,299,894	-		BT4065	0.75	-1.9
5,299,924	+		BT4065	0.77	-1.0
5,299,928	+		BT4065	0.77	-0.6
5,299,970	+		BT4065	0.80	+0.5
5,299,971	-		BT4065	0.80	-1.7
5,299,973	+		BT4065	0.80	-0.7
5,300,237	-				+0.9
5,300,251	+				+1.2
5,300,272	-				-1.5
5,300,354	+		BT4066	0.10	-1.5
5,300,365	+		BT4066	0.12	-1.3
5,300,386	+		BT4066	0.16	-1.3
5,300,386	+		BT4066	0.16	-0.7
5,300,386	+		BT4066	0.16	-0.5
5,300,420	+		BT4066	0.22	-1.7
5,300,420	+		BT4066	0.22	-0.6
5,300,422	+		BT4066	0.22	-1.7
5,300,424	+		BT4066	0.22	-1.1
5,300,424	+		BT4066	0.22	-1.0
5,300,444	+		BT4066	0.26	-0.7
5,300,444	+		BT4066	0.26	-1.1
5,300,467	+		BT4066	0.29	+0.6
5,300,521	+		BT4066	0.39	-0.9
5,300,545	+		BT4066	0.43	-0.5
5,300,603	+		BT4066	0.52	-1.0
5,300,603	+		BT4066	0.52	-1.3
5,300,714	+		BT4066	0.71	+0.4
5,300,910	+				+0.2
5,300,935	+		BT4067	0.17	-0.8
5,300,950	+		BT4067	0.21	-0.5
5,300,950	+		BT4067	0.21	+0.0
5,300,983	+		BT4067	0.30	-0.7
5,300,983	+		BT4067	0.30	-1.8
5,301,059	+		BT4067	0.52	-1.7
5,301,097	+		BT4067	0.63	-0.2
5,301,243	+				-0.2
5,301,255	+				-0.6
5,301,257	+				+1.2
5,301,273	+				-0.4