Experiment: Varel_Bryant_medium_Glucose with Bile salts 0.125 mg/mL; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0198 and BT0199 are separated by 75 nucleotides BT0199 and BT0200 are separated by 253 nucleotides
BT0198: BT0198 - hypothetical protein (NCBI ptt file), at 212,369 to 214,273
BT0198
BT0199: BT0199 - conserved hypothetical protein (NCBI ptt file), at 214,349 to 214,840
BT0199
BT0200: BT0200 - ATP phosphoribosyltransferase (NCBI ptt file), at 215,094 to 215,945
BT0200
Position (kb) 214
215 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 213.380 kb on - strand, within BT0198 at 213.501 kb on - strand, within BT0198 at 213.558 kb on + strand, within BT0198 at 213.626 kb on + strand, within BT0198 at 213.629 kb on - strand, within BT0198 at 213.648 kb on + strand, within BT0198 at 213.648 kb on + strand, within BT0198 at 213.659 kb on - strand, within BT0198 at 213.793 kb on - strand, within BT0198 at 213.794 kb on + strand, within BT0198 at 213.794 kb on + strand, within BT0198 at 213.797 kb on - strand, within BT0198 at 213.797 kb on - strand, within BT0198 at 213.798 kb on + strand, within BT0198 at 213.855 kb on + strand, within BT0198 at 213.871 kb on + strand, within BT0198 at 213.938 kb on - strand, within BT0198 at 214.023 kb on + strand, within BT0198 at 214.097 kb on + strand at 214.215 kb on + strand at 214.348 kb on + strand at 214.469 kb on - strand, within BT0199 at 214.630 kb on + strand, within BT0199 at 214.702 kb on + strand, within BT0199 at 214.728 kb on + strand, within BT0199 at 214.732 kb on + strand, within BT0199 at 214.751 kb on + strand, within BT0199 at 214.922 kb on - strand at 214.988 kb on + strand at 214.998 kb on - strand at 215.004 kb on - strand at 215.190 kb on - strand, within BT0200 at 215.230 kb on + strand, within BT0200 at 215.495 kb on - strand, within BT0200 at 215.495 kb on - strand, within BT0200 at 215.495 kb on - strand, within BT0200 at 215.577 kb on - strand, within BT0200 at 215.612 kb on - strand, within BT0200 at 215.674 kb on + strand, within BT0200 at 215.756 kb on + strand, within BT0200 at 215.771 kb on - strand, within BT0200 at 215.802 kb on - strand, within BT0200 at 215.805 kb on - strand, within BT0200
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Bile salts 0.125 mg/mL; pH 5.5 remove 213,380 - BT0198 0.53 -0.8 213,501 - BT0198 0.59 +2.0 213,558 + BT0198 0.62 -1.4 213,626 + BT0198 0.66 -0.3 213,629 - BT0198 0.66 -0.1 213,648 + BT0198 0.67 -0.7 213,648 + BT0198 0.67 +0.0 213,659 - BT0198 0.68 -1.9 213,793 - BT0198 0.75 -0.4 213,794 + BT0198 0.75 -0.7 213,794 + BT0198 0.75 -0.2 213,797 - BT0198 0.75 +0.7 213,797 - BT0198 0.75 -1.0 213,798 + BT0198 0.75 +0.5 213,855 + BT0198 0.78 +2.2 213,871 + BT0198 0.79 -0.2 213,938 - BT0198 0.82 -0.4 214,023 + BT0198 0.87 -0.8 214,097 + -0.8 214,215 + +1.6 214,348 + +0.8 214,469 - BT0199 0.24 -0.6 214,630 + BT0199 0.57 -0.8 214,702 + BT0199 0.72 -0.2 214,728 + BT0199 0.77 +0.9 214,732 + BT0199 0.78 +1.4 214,751 + BT0199 0.82 +0.4 214,922 - -2.2 214,988 + +1.0 214,998 - -3.4 215,004 - -1.9 215,190 - BT0200 0.11 -3.7 215,230 + BT0200 0.16 -2.2 215,495 - BT0200 0.47 -4.0 215,495 - BT0200 0.47 -1.2 215,495 - BT0200 0.47 -2.9 215,577 - BT0200 0.57 -2.2 215,612 - BT0200 0.61 -1.2 215,674 + BT0200 0.68 -4.0 215,756 + BT0200 0.78 -2.4 215,771 - BT0200 0.79 -2.2 215,802 - BT0200 0.83 -3.1 215,805 - BT0200 0.83 -1.4
Or see this region's nucleotide sequence