Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003467

Experiment: RCH2_defined_glucose_5mM with caffeic 0.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose_5mM with caffeic 0.5 mM
3,893,584	+		ABIE53_003465	0.78	-0.3
3,893,585	-		ABIE53_003465	0.78	-2.6
3,893,585	-		ABIE53_003465	0.78	-3.0
3,893,585	-		ABIE53_003465	0.78	+1.7
3,893,709	-				-3.1
3,893,709	-				-2.9
3,893,727	+				-1.7
3,893,727	+				-0.6
3,893,727	+				-2.2
3,893,727	+				-0.6
3,893,727	+				-1.6
3,893,727	+				-1.5
3,893,727	+				+0.2
3,893,727	+				-1.3
3,893,727	+				-1.1
3,893,727	+				-2.0
3,893,727	+				-3.0
3,893,727	+				-2.7
3,893,727	+				-1.8
3,893,727	+				-1.9
3,893,727	+				-0.2
3,893,727	+				-3.8
3,893,727	+				-0.6
3,893,727	+				-3.4
3,893,727	+				-3.7
3,893,727	+				-1.7
3,893,727	+				-2.4
3,893,727	+				-1.8
3,893,727	+				-1.3
3,893,727	+				-1.0
3,893,727	+				-1.3
3,893,727	+				-1.3
3,893,727	+				-1.5
3,893,728	-				-1.3
3,893,728	-				-4.0
3,893,728	-				-2.5
3,893,728	-				-2.5
3,893,728	-				+1.7
3,893,728	-				-2.5
3,893,728	-				-2.3
3,893,728	-				-1.9
3,893,728	-				-3.2
3,893,728	-				-1.4
3,893,728	-				-2.7
3,893,728	-				-1.8
3,893,728	-				-1.6
3,893,728	-				-3.7
3,893,728	-				-0.6
3,893,728	-				-2.7
3,893,728	-				+0.7
3,893,728	-				-3.8
3,893,728	-				-4.0
3,893,728	-				-0.3
3,893,728	-				-1.9
3,893,728	-				-1.1
3,893,728	-				-2.4
3,893,728	-				-2.2
3,893,872	+				-0.5
3,893,873	-				+0.1
3,893,873	-				-0.1
3,893,873	-				-1.8
3,893,887	+				+0.2
3,893,887	+				-0.3
3,893,887	+				+0.9
3,893,887	+				+0.6
3,893,887	+				+0.0
3,893,887	+				+1.1
3,893,887	+				-0.1
3,893,887	+				+0.4
3,893,887	+				+0.5
3,893,887	+				+0.5
3,893,888	-				+2.6
3,893,888	-				-0.3
3,893,888	-				+0.2
3,893,888	-				-0.6
3,893,888	-				-2.2
3,893,888	-				+2.4
3,893,888	-				-0.8
3,893,888	-				-1.8
3,893,888	-				-2.0
3,893,888	-				-1.3
3,893,951	+				+1.2
3,893,951	+				-1.8
3,893,951	+				-0.7
3,893,951	+				+2.7
3,893,951	+				+0.5
3,893,951	+				-1.1
3,893,952	-				+0.6
3,893,952	-				-0.8
3,893,952	-				+1.7
3,893,952	-				+1.0
3,893,952	-				+0.7
3,893,952	-				-1.8
3,893,952	-				+2.3
3,893,958	+				-0.8
3,893,959	-				+0.4
3,894,209	-		ABIE53_003466	0.75	-1.4
3,894,209	-		ABIE53_003466	0.75	-0.9
3,894,242	+				+0.7
3,894,243	-				+1.0
3,894,379	+				+0.5
3,894,379	+				-0.4
3,894,379	+				+0.7
3,894,379	+				+0.2
3,894,379	+				-1.1
3,894,379	+				+1.0
3,894,379	+				+0.9
3,894,379	+				-0.3
3,894,379	+				-0.1
3,894,379	+				-1.0
3,894,379	+				-0.0
3,894,379	+				-0.0
3,894,379	+				-1.1
3,894,379	+				+0.2
3,894,379	+				-0.5
3,894,380	-				-0.8
3,894,380	-				+0.9
3,894,380	-				-0.6
3,894,380	-				+0.0
3,894,380	-				-1.7
3,894,380	-				+0.2
3,894,380	-				-0.6
3,894,380	-				-0.6
3,894,380	-				-0.8
3,894,380	-				+0.9
3,894,586	+		ABIE53_003467	0.23	+1.0
3,894,587	-		ABIE53_003467	0.23	-1.1
3,894,587	-		ABIE53_003467	0.23	-1.3
3,894,587	-		ABIE53_003467	0.23	-0.0
3,894,587	-		ABIE53_003467	0.23	-0.4
3,894,587	-		ABIE53_003467	0.23	+1.4
3,894,625	-		ABIE53_003467	0.33	+1.0
3,894,657	+		ABIE53_003467	0.42	-0.1
3,894,658	-		ABIE53_003467	0.42	-1.3
3,894,696	+		ABIE53_003467	0.52	-0.4
3,894,696	+		ABIE53_003467	0.52	+0.2
3,894,696	+		ABIE53_003467	0.52	+0.7
3,894,696	+		ABIE53_003467	0.52	+0.5
3,894,696	+		ABIE53_003467	0.52	-0.1
3,894,696	+		ABIE53_003467	0.52	-0.3
3,894,696	+		ABIE53_003467	0.52	+1.7
3,894,696	+		ABIE53_003467	0.52	+0.2
3,894,696	+		ABIE53_003467	0.52	-1.3
3,894,696	+		ABIE53_003467	0.52	-0.4
3,894,696	+		ABIE53_003467	0.52	-0.3
3,894,696	+		ABIE53_003467	0.52	-1.1
3,894,696	+		ABIE53_003467	0.52	-0.4
3,894,696	+		ABIE53_003467	0.52	-1.1
3,894,696	+		ABIE53_003467	0.52	+0.6
3,894,696	+		ABIE53_003467	0.52	+0.7
3,894,696	+		ABIE53_003467	0.52	-1.3
3,894,696	+		ABIE53_003467	0.52	+0.7
3,894,696	+		ABIE53_003467	0.52	-2.4
3,894,696	+		ABIE53_003467	0.52	-0.8
3,894,696	+		ABIE53_003467	0.52	+1.1
3,894,696	+		ABIE53_003467	0.52	-1.1
3,894,697	-		ABIE53_003467	0.53	-0.3
3,894,697	-		ABIE53_003467	0.53	-0.0
3,894,697	-		ABIE53_003467	0.53	+0.5
3,894,697	-		ABIE53_003467	0.53	-0.1
3,894,697	-		ABIE53_003467	0.53	-1.1
3,894,697	-		ABIE53_003467	0.53	-0.4
3,894,697	-		ABIE53_003467	0.53	-0.8
3,894,697	-		ABIE53_003467	0.53	-1.3
3,894,697	-		ABIE53_003467	0.53	+0.7
3,894,697	-		ABIE53_003467	0.53	-0.4
3,894,697	-		ABIE53_003467	0.53	+1.3
3,894,697	-		ABIE53_003467	0.53	+0.6
3,894,697	-		ABIE53_003467	0.53	-0.7
3,894,697	-		ABIE53_003467	0.53	-1.0
3,894,697	-		ABIE53_003467	0.53	+0.1
3,894,697	-		ABIE53_003467	0.53	-1.0
3,894,699	-		ABIE53_003467	0.53	+1.7
3,894,717	+		ABIE53_003467	0.58	+0.6
3,894,717	+		ABIE53_003467	0.58	-0.0
3,894,717	+		ABIE53_003467	0.58	+0.4
3,894,718	-		ABIE53_003467	0.58	+2.0
3,894,718	-		ABIE53_003467	0.58	+0.6
3,894,718	-		ABIE53_003467	0.58	-0.6
3,894,718	-		ABIE53_003467	0.58	-0.7
3,894,718	-		ABIE53_003467	0.58	-0.8
3,894,718	-		ABIE53_003467	0.58	-2.3
3,894,907	+				-2.2
3,894,907	+				-1.2
3,894,907	+				+0.9
3,894,907	+				-0.7
3,894,907	+				+0.2
3,894,907	+				-2.8
3,894,907	+				-2.6
3,894,908	-				+0.2
3,894,908	-				-1.0
3,894,935	+				-1.3
3,894,935	+				-0.6
3,894,936	-				+2.3
3,894,936	-				+0.7
3,894,940	+				-1.7
3,894,940	+				-0.8
3,894,940	+				-1.2
3,894,941	-				-1.8
3,894,941	-				+2.9
3,894,941	-				+1.2
3,894,951	+				+0.3
3,894,951	+				-1.2
3,894,991	+				+2.7
3,894,991	+				+1.9
3,894,991	+				+1.5
3,894,991	+				+3.5
3,894,991	+				+1.7
3,894,991	+				+2.4
3,894,991	+				+3.2
3,894,992	-				+2.4
3,894,992	-				+3.0
3,895,054	-				+4.0
3,895,054	-				+3.3
3,895,093	+				+3.7
3,895,094	-				+2.7
3,895,094	-				+2.6
3,895,203	+				+2.7
3,895,203	+				+1.4
3,895,203	+				+1.7
3,895,203	+				+2.4
3,895,203	+				+3.2
3,895,203	+				+3.0
3,895,203	+				+2.5
3,895,203	+				+2.4
3,895,203	+				+3.0
3,895,203	+				+2.7
3,895,203	+				+3.5
3,895,203	+				+3.1
3,895,203	+				+1.8
3,895,203	+				+4.1
3,895,204	-				+2.9
3,895,204	-				+0.7
3,895,204	-				+3.0
3,895,204	-				+1.6
3,895,204	-				+2.6
3,895,204	-				+0.9
3,895,204	-				+3.3
3,895,204	-				+2.8
3,895,204	-				+2.3
3,895,204	-				+1.0
3,895,204	-				+2.0
3,895,204	-				+2.2
3,895,247	-		ABIE53_003468	0.11	+2.3
3,895,405	+		ABIE53_003468	0.22	+2.2
3,895,513	+		ABIE53_003468	0.29	+2.8
3,895,825	+		ABIE53_003468	0.49	+4.3
3,895,826	-		ABIE53_003468	0.49	-0.0