Strain Fitness in Shewanella oneidensis MR-1 around SO0672

Experiment: Survival in PBS at 4C, experiment1, 13 day

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0670 and SO0671 are separated by 215 nucleotidesSO0671 and SO0672 are separated by 45 nucleotidesSO0672 and SO0673 are separated by 143 nucleotides SO0670: SO0670 - hypothetical protein (NCBI ptt file), at 688,755 to 689,648 SO0670 SO0671: SO0671 - hypothetical protein (NCBI ptt file), at 689,864 to 690,100 SO0671 SO0672: SO0672 - hypothetical protein (NCBI ptt file), at 690,146 to 690,760 SO0672 SO0673: SO0673 - hypothetical protein (NCBI ptt file), at 690,904 to 692,157 SO0673 Position (kb) 690 691Strain fitness (log2 ratio) -2 -1 0 1 2at 689.188 kb on + strand, within SO0670at 689.203 kb on - strand, within SO0670at 689.237 kb on + strand, within SO0670at 689.242 kb on + strand, within SO0670at 689.282 kb on + strand, within SO0670at 689.287 kb on + strand, within SO0670at 689.287 kb on + strand, within SO0670at 689.295 kb on - strand, within SO0670at 689.295 kb on - strand, within SO0670at 689.342 kb on + strand, within SO0670at 689.350 kb on - strand, within SO0670at 689.365 kb on - strand, within SO0670at 689.365 kb on - strand, within SO0670at 689.420 kb on + strand, within SO0670at 689.428 kb on - strand, within SO0670at 689.499 kb on - strand, within SO0670at 689.602 kb on + strandat 689.603 kb on - strandat 689.610 kb on - strandat 689.763 kb on + strandat 689.766 kb on - strandat 689.788 kb on - strandat 689.792 kb on + strandat 689.811 kb on - strandat 689.819 kb on + strandat 689.928 kb on + strand, within SO0671at 689.928 kb on + strand, within SO0671at 689.930 kb on + strand, within SO0671at 689.930 kb on + strand, within SO0671at 689.936 kb on - strand, within SO0671at 689.938 kb on + strand, within SO0671at 689.938 kb on - strand, within SO0671at 689.938 kb on - strand, within SO0671at 689.945 kb on - strand, within SO0671at 689.945 kb on - strand, within SO0671at 689.959 kb on - strand, within SO0671at 690.002 kb on - strand, within SO0671at 690.003 kb on - strand, within SO0671at 690.003 kb on - strand, within SO0671at 690.019 kb on + strand, within SO0671at 690.078 kb on + strandat 690.079 kb on + strandat 690.079 kb on + strandat 690.087 kb on - strandat 690.087 kb on - strandat 690.087 kb on - strandat 690.090 kb on + strandat 690.098 kb on - strandat 690.098 kb on - strandat 690.169 kb on + strandat 690.175 kb on - strandat 690.175 kb on - strandat 690.177 kb on - strandat 690.179 kb on + strandat 690.179 kb on + strandat 690.187 kb on - strandat 690.187 kb on - strandat 690.187 kb on - strandat 690.187 kb on - strandat 690.187 kb on - strandat 690.191 kb on + strandat 690.197 kb on + strandat 690.221 kb on - strand, within SO0672at 690.222 kb on + strand, within SO0672at 690.231 kb on - strand, within SO0672at 690.237 kb on + strand, within SO0672at 690.245 kb on - strand, within SO0672at 690.253 kb on - strand, within SO0672at 690.255 kb on - strand, within SO0672at 690.255 kb on - strand, within SO0672at 690.255 kb on - strand, within SO0672at 690.255 kb on - strand, within SO0672at 690.255 kb on - strand, within SO0672at 690.260 kb on - strand, within SO0672at 690.262 kb on + strand, within SO0672at 690.272 kb on - strand, within SO0672at 690.302 kb on + strand, within SO0672at 690.307 kb on + strand, within SO0672at 690.322 kb on + strand, within SO0672at 690.330 kb on - strand, within SO0672at 690.330 kb on - strand, within SO0672at 690.330 kb on - strand, within SO0672at 690.332 kb on + strand, within SO0672at 690.352 kb on - strand, within SO0672at 690.362 kb on - strand, within SO0672at 690.367 kb on + strand, within SO0672at 690.369 kb on - strand, within SO0672at 690.406 kb on - strand, within SO0672at 690.408 kb on + strand, within SO0672at 690.408 kb on + strand, within SO0672at 690.451 kb on + strand, within SO0672at 690.459 kb on - strand, within SO0672at 690.464 kb on + strand, within SO0672at 690.464 kb on + strand, within SO0672at 690.469 kb on + strand, within SO0672at 690.469 kb on + strand, within SO0672at 690.469 kb on + strand, within SO0672at 690.469 kb on + strand, within SO0672at 690.472 kb on - strand, within SO0672at 690.472 kb on - strand, within SO0672at 690.472 kb on - strand, within SO0672at 690.472 kb on - strand, within SO0672at 690.475 kb on + strand, within SO0672at 690.477 kb on - strand, within SO0672at 690.486 kb on + strand, within SO0672at 690.503 kb on + strand, within SO0672at 690.514 kb on - strand, within SO0672at 690.521 kb on - strand, within SO0672at 690.541 kb on + strand, within SO0672at 690.580 kb on + strand, within SO0672at 690.580 kb on + strand, within SO0672at 690.636 kb on + strand, within SO0672at 690.636 kb on + strand, within SO0672at 690.636 kb on + strand, within SO0672at 690.636 kb on + strand, within SO0672at 690.636 kb on + strand, within SO0672at 690.642 kb on - strand, within SO0672at 690.642 kb on - strand, within SO0672at 690.643 kb on + strand, within SO0672at 690.651 kb on - strand, within SO0672at 690.651 kb on - strand, within SO0672at 690.651 kb on - strand, within SO0672at 690.651 kb on - strand, within SO0672at 690.676 kb on + strand, within SO0672at 690.684 kb on - strand, within SO0672at 690.684 kb on - strand, within SO0672at 690.688 kb on - strand, within SO0672at 690.701 kb on - strandat 690.711 kb on + strandat 690.711 kb on - strandat 690.712 kb on + strandat 690.714 kb on - strandat 690.719 kb on - strandat 690.728 kb on + strandat 690.736 kb on - strandat 690.743 kb on - strandat 690.748 kb on - strandat 690.748 kb on - strandat 690.748 kb on - strandat 690.754 kb on + strandat 690.758 kb on - strandat 690.758 kb on - strandat 690.818 kb on + strandat 690.818 kb on + strandat 690.818 kb on + strandat 690.818 kb on + strandat 690.818 kb on + strandat 690.820 kb on + strandat 690.825 kb on + strandat 690.826 kb on - strandat 690.826 kb on - strandat 690.833 kb on - strandat 690.833 kb on - strandat 690.833 kb on - strandat 690.921 kb on + strandat 691.029 kb on + strandat 691.029 kb on + strandat 691.143 kb on + strand, within SO0673at 691.211 kb on + strand, within SO0673at 691.267 kb on - strand, within SO0673at 691.277 kb on - strand, within SO0673at 691.428 kb on + strand, within SO0673at 691.428 kb on + strand, within SO0673at 691.428 kb on + strand, within SO0673at 691.439 kb on + strand, within SO0673at 691.439 kb on + strand, within SO0673at 691.439 kb on + strand, within SO0673at 691.439 kb on + strand, within SO0673at 691.440 kb on + strand, within SO0673at 691.449 kb on + strand, within SO0673at 691.456 kb on + strand, within SO0673at 691.457 kb on - strand, within SO0673at 691.496 kb on + strand, within SO0673at 691.496 kb on + strand, within SO0673at 691.496 kb on + strand, within SO0673at 691.496 kb on + strand, within SO0673at 691.496 kb on + strand, within SO0673at 691.496 kb on + strand, within SO0673at 691.497 kb on + strand, within SO0673at 691.504 kb on - strand, within SO0673at 691.504 kb on - strand, within SO0673at 691.504 kb on - strand, within SO0673at 691.504 kb on - strand, within SO0673at 691.504 kb on - strand, within SO0673at 691.504 kb on - strand, within SO0673at 691.504 kb on - strand, within SO0673at 691.504 kb on - strand, within SO0673at 691.504 kb on - strand, within SO0673at 691.504 kb on - strand, within SO0673at 691.505 kb on - strand, within SO0673at 691.528 kb on - strand, within SO0673at 691.548 kb on + strand, within SO0673at 691.548 kb on + strand, within SO0673at 691.551 kb on - strand, within SO0673at 691.556 kb on - strand, within SO0673at 691.556 kb on - strand, within SO0673at 691.561 kb on + strand, within SO0673at 691.569 kb on + strand, within SO0673at 691.584 kb on + strand, within SO0673at 691.584 kb on + strand, within SO0673at 691.584 kb on + strand, within SO0673at 691.584 kb on + strand, within SO0673at 691.584 kb on + strand, within SO0673at 691.584 kb on + strand, within SO0673at 691.584 kb on + strand, within SO0673at 691.584 kb on + strand, within SO0673at 691.584 kb on + strand, within SO0673at 691.584 kb on + strand, within SO0673at 691.584 kb on + strand, within SO0673at 691.592 kb on - strand, within SO0673at 691.592 kb on - strand, within SO0673at 691.592 kb on - strand, within SO0673at 691.592 kb on - strand, within SO0673at 691.592 kb on - strand, within SO0673at 691.592 kb on - strand, within SO0673at 691.592 kb on - strand, within SO0673at 691.592 kb on - strand, within SO0673at 691.592 kb on - strand, within SO0673at 691.592 kb on - strand, within SO0673at 691.614 kb on - strand, within SO0673at 691.620 kb on + strand, within SO0673at 691.620 kb on + strand, within SO0673at 691.630 kb on + strand, within SO0673at 691.642 kb on - strand, within SO0673at 691.642 kb on - strand, within SO0673

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival in PBS at 4C, experiment1, 13 day
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689,188 + SO0670 0.48 -0.0
689,203 - SO0670 0.50 -0.3
689,237 + SO0670 0.54 +0.2
689,242 + SO0670 0.54 -0.3
689,282 + SO0670 0.59 -0.3
689,287 + SO0670 0.60 +0.4
689,287 + SO0670 0.60 -2.0
689,295 - SO0670 0.60 +0.1
689,295 - SO0670 0.60 +1.0
689,342 + SO0670 0.66 -0.2
689,350 - SO0670 0.67 +0.4
689,365 - SO0670 0.68 -0.2
689,365 - SO0670 0.68 -0.1
689,420 + SO0670 0.74 -0.4
689,428 - SO0670 0.75 +0.5
689,499 - SO0670 0.83 -0.6
689,602 + -1.0
689,603 - -0.4
689,610 - +1.0
689,763 + -0.2
689,766 - +0.1
689,788 - -0.2
689,792 + +0.1
689,811 - -0.3
689,819 + +0.1
689,928 + SO0671 0.27 -0.1
689,928 + SO0671 0.27 -0.4
689,930 + SO0671 0.28 +0.4
689,930 + SO0671 0.28 +0.3
689,936 - SO0671 0.30 -0.3
689,938 + SO0671 0.31 +1.2
689,938 - SO0671 0.31 +0.8
689,938 - SO0671 0.31 +0.2
689,945 - SO0671 0.34 +0.2
689,945 - SO0671 0.34 +0.2
689,959 - SO0671 0.40 -0.1
690,002 - SO0671 0.58 +0.2
690,003 - SO0671 0.59 +0.5
690,003 - SO0671 0.59 -0.7
690,019 + SO0671 0.65 -1.8
690,078 + -0.1
690,079 + -0.4
690,079 + +1.3
690,087 - +0.3
690,087 - -0.3
690,087 - -0.1
690,090 + -0.2
690,098 - +0.0
690,098 - -0.1
690,169 + +1.4
690,175 - +0.6
690,175 - -1.0
690,177 - +0.5
690,179 + -0.2
690,179 + +0.1
690,187 - -0.2
690,187 - +0.0
690,187 - +0.1
690,187 - -0.3
690,187 - +0.1
690,191 + -1.6
690,197 + -0.6
690,221 - SO0672 0.12 -0.8
690,222 + SO0672 0.12 -0.2
690,231 - SO0672 0.14 -1.0
690,237 + SO0672 0.15 -0.6
690,245 - SO0672 0.16 -0.4
690,253 - SO0672 0.17 -1.0
690,255 - SO0672 0.18 -0.1
690,255 - SO0672 0.18 +0.1
690,255 - SO0672 0.18 -0.3
690,255 - SO0672 0.18 -1.2
690,255 - SO0672 0.18 -0.5
690,260 - SO0672 0.19 -0.7
690,262 + SO0672 0.19 +0.4
690,272 - SO0672 0.20 -1.1
690,302 + SO0672 0.25 -0.2
690,307 + SO0672 0.26 -0.3
690,322 + SO0672 0.29 -1.6
690,330 - SO0672 0.30 +0.6
690,330 - SO0672 0.30 +0.2
690,330 - SO0672 0.30 -0.1
690,332 + SO0672 0.30 +0.1
690,352 - SO0672 0.33 -0.6
690,362 - SO0672 0.35 +0.0
690,367 + SO0672 0.36 -1.0
690,369 - SO0672 0.36 -0.9
690,406 - SO0672 0.42 +0.4
690,408 + SO0672 0.43 +0.2
690,408 + SO0672 0.43 +0.3
690,451 + SO0672 0.50 -0.4
690,459 - SO0672 0.51 -0.2
690,464 + SO0672 0.52 -0.3
690,464 + SO0672 0.52 -0.1
690,469 + SO0672 0.53 +1.2
690,469 + SO0672 0.53 +0.0
690,469 + SO0672 0.53 -0.7
690,469 + SO0672 0.53 -0.2
690,472 - SO0672 0.53 +0.3
690,472 - SO0672 0.53 -0.7
690,472 - SO0672 0.53 -0.0
690,472 - SO0672 0.53 +0.3
690,475 + SO0672 0.53 -1.4
690,477 - SO0672 0.54 +0.1
690,486 + SO0672 0.55 -1.3
690,503 + SO0672 0.58 +0.0
690,514 - SO0672 0.60 -0.1
690,521 - SO0672 0.61 -0.3
690,541 + SO0672 0.64 -2.2
690,580 + SO0672 0.71 -0.7
690,580 + SO0672 0.71 -0.1
690,636 + SO0672 0.80 -1.6
690,636 + SO0672 0.80 -0.2
690,636 + SO0672 0.80 -0.5
690,636 + SO0672 0.80 -0.7
690,636 + SO0672 0.80 -2.3
690,642 - SO0672 0.81 +0.4
690,642 - SO0672 0.81 +1.0
690,643 + SO0672 0.81 -0.4
690,651 - SO0672 0.82 -0.4
690,651 - SO0672 0.82 +0.2
690,651 - SO0672 0.82 -1.1
690,651 - SO0672 0.82 -0.3
690,676 + SO0672 0.86 +0.0
690,684 - SO0672 0.87 +0.0
690,684 - SO0672 0.87 +0.3
690,688 - SO0672 0.88 -0.3
690,701 - -0.8
690,711 + -0.6
690,711 - -0.5
690,712 + +2.1
690,714 - -0.3
690,719 - -0.1
690,728 + +0.2
690,736 - +0.7
690,743 - -0.4
690,748 - +0.3
690,748 - -0.5
690,748 - -1.0
690,754 + +0.0
690,758 - -1.0
690,758 - +0.8
690,818 + +0.0
690,818 + +0.8
690,818 + -0.3
690,818 + +0.8
690,818 + -1.0
690,820 + -0.2
690,825 + +0.1
690,826 - +0.2
690,826 - +1.0
690,833 - -0.0
690,833 - -0.7
690,833 - +0.4
690,921 + +1.9
691,029 + +1.0
691,029 + +2.0
691,143 + SO0673 0.19 +0.3
691,211 + SO0673 0.24 -0.3
691,267 - SO0673 0.29 -0.3
691,277 - SO0673 0.30 -0.9
691,428 + SO0673 0.42 -1.3
691,428 + SO0673 0.42 +0.1
691,428 + SO0673 0.42 +1.0
691,439 + SO0673 0.43 +0.4
691,439 + SO0673 0.43 +0.4
691,439 + SO0673 0.43 -0.4
691,439 + SO0673 0.43 +0.5
691,440 + SO0673 0.43 +1.3
691,449 + SO0673 0.43 -0.2
691,456 + SO0673 0.44 -0.5
691,457 - SO0673 0.44 +0.0
691,496 + SO0673 0.47 -0.3
691,496 + SO0673 0.47 +0.2
691,496 + SO0673 0.47 +0.5
691,496 + SO0673 0.47 -0.0
691,496 + SO0673 0.47 -0.6
691,496 + SO0673 0.47 -1.1
691,497 + SO0673 0.47 -0.4
691,504 - SO0673 0.48 -0.1
691,504 - SO0673 0.48 -0.1
691,504 - SO0673 0.48 -1.8
691,504 - SO0673 0.48 +0.1
691,504 - SO0673 0.48 +1.0
691,504 - SO0673 0.48 -0.3
691,504 - SO0673 0.48 -0.4
691,504 - SO0673 0.48 +0.0
691,504 - SO0673 0.48 -1.1
691,504 - SO0673 0.48 -1.0
691,505 - SO0673 0.48 +0.4
691,528 - SO0673 0.50 +0.4
691,548 + SO0673 0.51 -0.7
691,548 + SO0673 0.51 -0.4
691,551 - SO0673 0.52 -0.4
691,556 - SO0673 0.52 +0.4
691,556 - SO0673 0.52 +0.4
691,561 + SO0673 0.52 +0.4
691,569 + SO0673 0.53 -0.1
691,584 + SO0673 0.54 -0.6
691,584 + SO0673 0.54 +0.6
691,584 + SO0673 0.54 -0.1
691,584 + SO0673 0.54 +0.5
691,584 + SO0673 0.54 +0.6
691,584 + SO0673 0.54 +0.6
691,584 + SO0673 0.54 -0.1
691,584 + SO0673 0.54 -0.4
691,584 + SO0673 0.54 -0.4
691,584 + SO0673 0.54 -0.5
691,584 + SO0673 0.54 -0.7
691,592 - SO0673 0.55 +0.5
691,592 - SO0673 0.55 -0.3
691,592 - SO0673 0.55 -0.3
691,592 - SO0673 0.55 -0.4
691,592 - SO0673 0.55 -0.2
691,592 - SO0673 0.55 -1.6
691,592 - SO0673 0.55 -0.3
691,592 - SO0673 0.55 -0.2
691,592 - SO0673 0.55 -0.5
691,592 - SO0673 0.55 -0.8
691,614 - SO0673 0.57 -0.8
691,620 + SO0673 0.57 +0.4
691,620 + SO0673 0.57 -0.1
691,630 + SO0673 0.58 +0.0
691,642 - SO0673 0.59 -0.3
691,642 - SO0673 0.59 +0.7

Or see this region's nucleotide sequence