Experiment: Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06695 and BWI76_RS06700 are separated by 56 nucleotides BWI76_RS06700 and BWI76_RS06705 are separated by 10 nucleotides BWI76_RS06705 and BWI76_RS06710 are separated by 4 nucleotides
BWI76_RS06695: BWI76_RS06695 - ABC transporter substrate-binding protein, at 1,403,818 to 1,405,050
_RS06695
BWI76_RS06700: BWI76_RS06700 - putative maltodextrin transport permease, at 1,405,107 to 1,406,414
_RS06700
BWI76_RS06705: BWI76_RS06705 - binding-protein-dependent transport system inner membrane protein, at 1,406,425 to 1,407,276
_RS06705
BWI76_RS06710: BWI76_RS06710 - glycosyl hydrolase, family 53, at 1,407,281 to 1,408,483
_RS06710
Position (kb)
1405
1406
1407 Strain fitness (log2 ratio)
-1
0
1
2 at 1404.203 kb on - strand, within BWI76_RS06695 at 1404.323 kb on - strand, within BWI76_RS06695 at 1404.386 kb on + strand, within BWI76_RS06695 at 1404.436 kb on + strand, within BWI76_RS06695 at 1404.588 kb on + strand, within BWI76_RS06695 at 1404.596 kb on + strand, within BWI76_RS06695 at 1404.696 kb on - strand, within BWI76_RS06695 at 1404.702 kb on - strand, within BWI76_RS06695 at 1404.950 kb on + strand at 1404.950 kb on + strand at 1405.293 kb on + strand, within BWI76_RS06700 at 1405.293 kb on + strand, within BWI76_RS06700 at 1405.393 kb on + strand, within BWI76_RS06700 at 1405.400 kb on + strand, within BWI76_RS06700 at 1405.461 kb on + strand, within BWI76_RS06700 at 1405.461 kb on + strand, within BWI76_RS06700 at 1405.461 kb on + strand, within BWI76_RS06700 at 1405.469 kb on - strand, within BWI76_RS06700 at 1405.534 kb on + strand, within BWI76_RS06700 at 1405.689 kb on + strand, within BWI76_RS06700 at 1405.942 kb on + strand, within BWI76_RS06700 at 1405.975 kb on - strand, within BWI76_RS06700 at 1405.995 kb on + strand, within BWI76_RS06700 at 1406.138 kb on + strand, within BWI76_RS06700 at 1406.144 kb on - strand, within BWI76_RS06700 at 1406.531 kb on + strand, within BWI76_RS06705 at 1406.560 kb on + strand, within BWI76_RS06705 at 1406.619 kb on + strand, within BWI76_RS06705 at 1406.825 kb on + strand, within BWI76_RS06705 at 1406.881 kb on + strand, within BWI76_RS06705 at 1406.929 kb on - strand, within BWI76_RS06705 at 1406.973 kb on - strand, within BWI76_RS06705 at 1407.115 kb on + strand, within BWI76_RS06705
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 1,404,203 - BWI76_RS06695 0.31 +0.1 1,404,323 - BWI76_RS06695 0.41 +1.5 1,404,386 + BWI76_RS06695 0.46 -0.4 1,404,436 + BWI76_RS06695 0.50 +2.3 1,404,588 + BWI76_RS06695 0.62 +0.2 1,404,596 + BWI76_RS06695 0.63 -0.3 1,404,696 - BWI76_RS06695 0.71 +1.0 1,404,702 - BWI76_RS06695 0.72 +0.2 1,404,950 + -0.1 1,404,950 + +1.1 1,405,293 + BWI76_RS06700 0.14 +0.1 1,405,293 + BWI76_RS06700 0.14 -0.3 1,405,393 + BWI76_RS06700 0.22 +0.0 1,405,400 + BWI76_RS06700 0.22 -1.6 1,405,461 + BWI76_RS06700 0.27 +0.3 1,405,461 + BWI76_RS06700 0.27 +0.5 1,405,461 + BWI76_RS06700 0.27 +0.0 1,405,469 - BWI76_RS06700 0.28 -1.7 1,405,534 + BWI76_RS06700 0.33 +0.7 1,405,689 + BWI76_RS06700 0.44 -0.5 1,405,942 + BWI76_RS06700 0.64 -0.1 1,405,975 - BWI76_RS06700 0.66 -0.7 1,405,995 + BWI76_RS06700 0.68 -0.3 1,406,138 + BWI76_RS06700 0.79 -0.3 1,406,144 - BWI76_RS06700 0.79 +0.1 1,406,531 + BWI76_RS06705 0.12 +0.3 1,406,560 + BWI76_RS06705 0.16 -0.2 1,406,619 + BWI76_RS06705 0.23 +0.3 1,406,825 + BWI76_RS06705 0.47 -0.3 1,406,881 + BWI76_RS06705 0.54 +0.8 1,406,929 - BWI76_RS06705 0.59 +0.2 1,406,973 - BWI76_RS06705 0.64 -0.6 1,407,115 + BWI76_RS06705 0.81 +0.1
Or see this region's nucleotide sequence