Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_006457

Experiment: RCH2_defined_glucose_5mM with caffeic 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose_5mM with caffeic 1 mM
2,844,063	+		ABIE53_006455	0.87	-2.3
2,844,064	-		ABIE53_006455	0.87	-1.2
2,844,072	+		ABIE53_006455	0.87	-0.9
2,844,073	-		ABIE53_006455	0.87	-2.4
2,844,073	-		ABIE53_006455	0.87	-0.4
2,844,073	-		ABIE53_006455	0.87	+1.1
2,844,073	-		ABIE53_006455	0.87	-1.5
2,844,256	-				+1.2
2,844,285	+				+0.4
2,844,285	+				-0.7
2,844,286	-				-0.4
2,844,286	-				-1.1
2,844,286	-				-1.3
2,844,286	-				+0.7
2,844,288	+				-0.4
2,844,335	-				-0.7
2,844,335	-				-0.3
2,844,345	+				-1.2
2,844,346	-				-0.4
2,844,398	+				-2.1
2,844,398	+				-0.9
2,844,398	+				+3.3
2,844,398	+				+1.6
2,844,398	+				-1.4
2,844,399	-				-2.2
2,844,399	-				+2.6
2,844,399	-				+0.9
2,844,399	-				-0.3
2,844,399	-				-0.8
2,844,401	+				+0.9
2,844,402	-				-0.3
2,844,418	-				+0.1
2,844,447	+				-0.4
2,844,447	+				+1.2
2,844,535	-		ABIE53_006456	0.25	+1.6
2,844,648	+		ABIE53_006456	0.48	-2.3
2,844,648	+		ABIE53_006456	0.48	-2.5
2,844,649	-		ABIE53_006456	0.49	-0.2
2,844,649	-		ABIE53_006456	0.49	-1.4
2,844,649	-		ABIE53_006456	0.49	-1.4
2,844,689	+		ABIE53_006456	0.57	+0.6
2,844,690	+		ABIE53_006456	0.57	+1.6
2,844,690	+		ABIE53_006456	0.57	-0.0
2,844,690	+		ABIE53_006456	0.57	+0.5
2,844,690	+		ABIE53_006456	0.57	+0.3
2,844,690	+		ABIE53_006456	0.57	+0.2
2,844,691	-		ABIE53_006456	0.57	-0.4
2,844,691	-		ABIE53_006456	0.57	-0.7
2,844,984	+				+0.2
2,844,985	-				-0.2
2,844,993	+				-0.2
2,844,994	-				-0.4
2,845,071	+		ABIE53_006457	0.17	+0.3
2,845,071	+		ABIE53_006457	0.17	-1.4
2,845,072	-		ABIE53_006457	0.18	+1.6
2,845,072	-		ABIE53_006457	0.18	-0.1
2,845,072	-		ABIE53_006457	0.18	-1.8
2,845,072	-		ABIE53_006457	0.18	-0.7
2,845,093	-		ABIE53_006457	0.22	-0.7
2,845,164	+		ABIE53_006457	0.36	-0.1
2,845,165	-		ABIE53_006457	0.36	+1.6
2,845,165	-		ABIE53_006457	0.36	-1.2
2,845,176	-		ABIE53_006457	0.38	+0.7
2,845,176	-		ABIE53_006457	0.38	+0.6
2,845,176	-		ABIE53_006457	0.38	+0.7
2,845,176	-		ABIE53_006457	0.38	+3.2
2,845,186	-		ABIE53_006457	0.40	-1.4
2,845,186	-		ABIE53_006457	0.40	-1.5
2,845,186	-		ABIE53_006457	0.40	-3.4
2,845,186	-		ABIE53_006457	0.40	-1.1
2,845,270	-		ABIE53_006457	0.57	-0.8
2,845,339	+		ABIE53_006457	0.71	-1.5
2,845,340	-		ABIE53_006457	0.71	+0.1
2,845,473	+				+2.6
2,845,473	+				-1.5
2,845,474	-				-0.7
2,845,474	-				-1.2
2,845,486	+				-0.9
2,845,486	+				-1.5
2,845,516	+				-1.4
2,845,523	+				+0.6
2,845,524	-				-0.8
2,845,524	-				+0.1
2,845,758	+		ABIE53_006458	0.13	+0.1
2,845,758	+		ABIE53_006458	0.13	+0.2
2,845,759	-		ABIE53_006458	0.13	-2.4
2,845,759	-		ABIE53_006458	0.13	-0.9
2,845,759	-		ABIE53_006458	0.13	-1.2
2,845,841	+		ABIE53_006458	0.19	+0.4
2,845,842	-		ABIE53_006458	0.19	+0.2
2,845,842	-		ABIE53_006458	0.19	+0.6
2,845,846	-		ABIE53_006458	0.19	-1.2
2,845,875	+		ABIE53_006458	0.21	+0.5
2,845,875	+		ABIE53_006458	0.21	-3.0
2,845,875	+		ABIE53_006458	0.21	+0.2
2,845,875	+		ABIE53_006458	0.21	+0.1
2,845,876	-		ABIE53_006458	0.21	-0.1
2,845,876	-		ABIE53_006458	0.21	+0.4
2,845,926	+		ABIE53_006458	0.25	+0.6
2,845,927	-		ABIE53_006458	0.25	+0.9
2,845,927	-		ABIE53_006458	0.25	+1.4
2,845,971	+		ABIE53_006458	0.28	+2.4
2,845,972	-		ABIE53_006458	0.28	-0.6
2,846,002	+		ABIE53_006458	0.30	+1.4
2,846,182	+		ABIE53_006458	0.42	-3.3
2,846,183	-		ABIE53_006458	0.42	-0.7
2,846,183	-		ABIE53_006458	0.42	+0.7
2,846,183	-		ABIE53_006458	0.42	-0.9
2,846,183	-		ABIE53_006458	0.42	+1.6
2,846,223	+		ABIE53_006458	0.45	-1.4
2,846,223	+		ABIE53_006458	0.45	-1.2
2,846,223	+		ABIE53_006458	0.45	-1.0
2,846,223	+		ABIE53_006458	0.45	-1.2
2,846,223	+		ABIE53_006458	0.45	+0.2
2,846,224	-		ABIE53_006458	0.45	+0.0
2,846,224	-		ABIE53_006458	0.45	-0.4
2,846,224	-		ABIE53_006458	0.45	-2.9
2,846,341	-		ABIE53_006458	0.52	-1.0
2,846,400	-		ABIE53_006458	0.56	-0.2
2,846,400	-		ABIE53_006458	0.56	-0.1