Experiment: RCH2_defined_glucose_5mM with caffeic 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004273 and ABIE53_004274 overlap by 4 nucleotides ABIE53_004274 and ABIE53_004275 are separated by 5 nucleotides ABIE53_004275 and ABIE53_004276 are separated by 92 nucleotides ABIE53_004276 and ABIE53_004277 overlap by 4 nucleotides
ABIE53_004273: ABIE53_004273 - 4-carboxymuconolactone decarboxylase, at 449,583 to 449,975
_004273
ABIE53_004274: ABIE53_004274 - 3-oxoadipate enol-lactonase, at 449,972 to 450,763
_004274
ABIE53_004275: ABIE53_004275 - 3-carboxy-cis,cis-muconate cycloisomerase, at 450,769 to 452,148
_004275
ABIE53_004276: ABIE53_004276 - 3-oxoadipate CoA-transferase beta subunit, at 452,241 to 452,900
_004276
ABIE53_004277: ABIE53_004277 - 3-oxoadipate CoA-transferase alpha subunit, at 452,897 to 453,622
_004277
Position (kb) 450
451
452
453 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 450.063 kb on + strand, within ABIE53_004274 at 450.216 kb on + strand, within ABIE53_004274 at 450.233 kb on - strand, within ABIE53_004274 at 450.285 kb on + strand, within ABIE53_004274 at 450.511 kb on + strand, within ABIE53_004274 at 450.555 kb on + strand, within ABIE53_004274 at 450.556 kb on - strand, within ABIE53_004274 at 450.556 kb on - strand, within ABIE53_004274 at 450.830 kb on + strand at 450.830 kb on + strand at 450.830 kb on + strand at 450.830 kb on + strand at 450.831 kb on - strand at 450.831 kb on - strand at 450.851 kb on + strand at 450.851 kb on + strand at 450.851 kb on + strand at 450.852 kb on - strand at 451.458 kb on + strand, within ABIE53_004275 at 451.458 kb on + strand, within ABIE53_004275 at 451.459 kb on - strand, within ABIE53_004275 at 451.459 kb on - strand, within ABIE53_004275 at 451.663 kb on - strand, within ABIE53_004275 at 451.844 kb on + strand, within ABIE53_004275 at 451.845 kb on - strand, within ABIE53_004275 at 451.845 kb on - strand, within ABIE53_004275 at 452.182 kb on + strand at 452.183 kb on - strand at 452.183 kb on - strand at 452.183 kb on - strand at 452.183 kb on - strand at 452.183 kb on - strand at 452.197 kb on + strand at 452.198 kb on - strand at 452.198 kb on - strand at 452.198 kb on - strand at 452.216 kb on + strand at 452.380 kb on + strand, within ABIE53_004276 at 452.380 kb on + strand, within ABIE53_004276 at 452.381 kb on - strand, within ABIE53_004276 at 452.416 kb on + strand, within ABIE53_004276 at 452.416 kb on + strand, within ABIE53_004276 at 452.476 kb on + strand, within ABIE53_004276 at 452.476 kb on + strand, within ABIE53_004276 at 452.477 kb on - strand, within ABIE53_004276 at 452.477 kb on - strand, within ABIE53_004276 at 452.836 kb on + strand at 452.837 kb on - strand at 452.837 kb on - strand at 452.852 kb on + strand at 453.142 kb on + strand, within ABIE53_004277 at 453.143 kb on - strand, within ABIE53_004277 at 453.144 kb on + strand, within ABIE53_004277 at 453.144 kb on + strand, within ABIE53_004277 at 453.144 kb on + strand, within ABIE53_004277 at 453.144 kb on + strand, within ABIE53_004277 at 453.144 kb on + strand, within ABIE53_004277 at 453.144 kb on + strand, within ABIE53_004277 at 453.145 kb on - strand, within ABIE53_004277 at 453.145 kb on - strand, within ABIE53_004277 at 453.145 kb on - strand, within ABIE53_004277 at 453.145 kb on - strand, within ABIE53_004277 at 453.145 kb on - strand, within ABIE53_004277
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with caffeic 1 mM remove 450,063 + ABIE53_004274 0.11 +0.2 450,216 + ABIE53_004274 0.31 -0.6 450,233 - ABIE53_004274 0.33 -1.2 450,285 + ABIE53_004274 0.40 -1.4 450,511 + ABIE53_004274 0.68 +0.2 450,555 + ABIE53_004274 0.74 -0.8 450,556 - ABIE53_004274 0.74 -3.5 450,556 - ABIE53_004274 0.74 -1.6 450,830 + -1.2 450,830 + +0.8 450,830 + -2.6 450,830 + -3.9 450,831 - -0.6 450,831 - -1.4 450,851 + -2.9 450,851 + -2.3 450,851 + -3.9 450,852 - -0.6 451,458 + ABIE53_004275 0.50 +0.8 451,458 + ABIE53_004275 0.50 -1.2 451,459 - ABIE53_004275 0.50 -0.2 451,459 - ABIE53_004275 0.50 -2.8 451,663 - ABIE53_004275 0.65 -3.0 451,844 + ABIE53_004275 0.78 -3.0 451,845 - ABIE53_004275 0.78 -1.2 451,845 - ABIE53_004275 0.78 -4.0 452,182 + -2.4 452,183 - +0.4 452,183 - -0.4 452,183 - -0.6 452,183 - +0.8 452,183 - +0.2 452,197 + -0.8 452,198 - -0.1 452,198 - +3.2 452,198 - -1.6 452,216 + -2.1 452,380 + ABIE53_004276 0.21 -1.5 452,380 + ABIE53_004276 0.21 -2.9 452,381 - ABIE53_004276 0.21 -1.0 452,416 + ABIE53_004276 0.27 -2.5 452,416 + ABIE53_004276 0.27 -2.5 452,476 + ABIE53_004276 0.36 -1.5 452,476 + ABIE53_004276 0.36 -1.4 452,477 - ABIE53_004276 0.36 -3.0 452,477 - ABIE53_004276 0.36 -2.2 452,836 + -3.6 452,837 - -1.4 452,837 - -3.1 452,852 + -2.6 453,142 + ABIE53_004277 0.34 +0.8 453,143 - ABIE53_004277 0.34 -0.6 453,144 + ABIE53_004277 0.34 -4.0 453,144 + ABIE53_004277 0.34 -3.0 453,144 + ABIE53_004277 0.34 -0.6 453,144 + ABIE53_004277 0.34 -4.1 453,144 + ABIE53_004277 0.34 -2.6 453,144 + ABIE53_004277 0.34 +0.0 453,145 - ABIE53_004277 0.34 -3.6 453,145 - ABIE53_004277 0.34 -1.7 453,145 - ABIE53_004277 0.34 -1.4 453,145 - ABIE53_004277 0.34 -3.3 453,145 - ABIE53_004277 0.34 -1.7
Or see this region's nucleotide sequence