Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002243

Experiment: RCH2_defined_glucose_5mM with caffeic 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose_5mM with caffeic 1 mM
2,518,600	+				+2.6
2,518,600	+				-0.0
2,518,601	-				-0.4
2,518,601	-				+0.0
2,518,644	+				+0.6
2,518,644	+				-1.5
2,518,644	+				-0.7
2,518,644	+				+3.2
2,518,645	-				+0.8
2,518,645	-				-0.6
2,518,646	-				-0.1
2,518,659	+				-2.8
2,518,895	-				+0.6
2,518,919	+				+0.6
2,518,930	+				-1.8
2,518,931	-				-0.4
2,518,960	+				-1.0
2,518,961	-				+0.5
2,519,068	+		ABIE53_002242	0.20	-2.4
2,519,068	+		ABIE53_002242	0.20	-1.0
2,519,068	+		ABIE53_002242	0.20	-0.4
2,519,069	-		ABIE53_002242	0.20	-2.0
2,519,069	-		ABIE53_002242	0.20	-0.4
2,519,374	+		ABIE53_002242	0.77	-1.6
2,519,375	-		ABIE53_002242	0.77	+0.4
2,519,522	+				-1.7
2,519,522	+				-1.8
2,519,523	-				+2.1
2,519,523	-				+1.2
2,519,620	+				+0.8
2,519,620	+				+0.6
2,519,621	-				+1.6
2,519,641	+				+0.8
2,519,641	+				+1.4
2,519,642	-				+2.6
2,519,642	-				+0.6
2,519,642	-				+0.8
2,519,642	-				+1.6
2,519,642	-				-0.1
2,519,663	+				+0.3
2,519,688	-				-0.3
2,519,707	+		ABIE53_002243	0.11	+1.6
2,519,707	+		ABIE53_002243	0.11	-0.5
2,519,708	-		ABIE53_002243	0.11	+1.1
2,519,986	+		ABIE53_002243	0.38	-1.4
2,519,986	+		ABIE53_002243	0.38	-1.3
2,519,986	+		ABIE53_002243	0.38	-1.0
2,519,986	+		ABIE53_002243	0.38	-0.7
2,519,986	+		ABIE53_002243	0.38	-1.2
2,519,987	-		ABIE53_002243	0.38	-0.1
2,520,071	-		ABIE53_002243	0.47	-0.2
2,520,454	-		ABIE53_002243	0.84	+0.0
2,520,454	-		ABIE53_002243	0.84	-0.2
2,520,454	-		ABIE53_002243	0.84	-1.6
2,520,475	+		ABIE53_002243	0.86	+2.0
2,520,593	+				-0.4
2,520,660	+				+0.4
2,520,661	-				+1.6
2,520,661	-				+0.9
2,521,062	+		ABIE53_002244	0.25	-2.4
2,521,063	-		ABIE53_002244	0.25	+1.9
2,521,225	-		ABIE53_002244	0.35	-2.0
2,521,227	+		ABIE53_002244	0.35	+0.1
2,521,227	+		ABIE53_002244	0.35	+0.5
2,521,227	+		ABIE53_002244	0.35	+0.7
2,521,228	-		ABIE53_002244	0.35	+0.8
2,521,228	-		ABIE53_002244	0.35	+2.0
2,521,228	-		ABIE53_002244	0.35	+0.5
2,521,228	-		ABIE53_002244	0.35	+1.5
2,521,563	+		ABIE53_002244	0.54	+0.0
2,521,564	-		ABIE53_002244	0.54	+0.7
2,521,564	-		ABIE53_002244	0.54	+2.4