Experiment: RCH2_defined_glucose_5mM with caffeic 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000636 and ABIE53_000637 overlap by 4 nucleotides ABIE53_000637 and ABIE53_000638 are separated by 40 nucleotides
ABIE53_000636: ABIE53_000636 - taurine transport system ATP-binding protein, at 692,202 to 692,999
_000636
ABIE53_000637: ABIE53_000637 - taurine transport system permease protein, at 692,996 to 693,865
_000637
ABIE53_000638: ABIE53_000638 - HAD superfamily hydrolase (TIGR01490 family), at 693,906 to 694,514
_000638
Position (kb) 693
694
695 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 693.404 kb on + strand, within ABIE53_000637 at 693.404 kb on + strand, within ABIE53_000637 at 693.404 kb on + strand, within ABIE53_000637 at 693.405 kb on - strand, within ABIE53_000637 at 693.428 kb on + strand, within ABIE53_000637 at 693.428 kb on + strand, within ABIE53_000637 at 693.428 kb on + strand, within ABIE53_000637 at 693.428 kb on + strand, within ABIE53_000637 at 693.428 kb on + strand, within ABIE53_000637 at 693.429 kb on - strand, within ABIE53_000637 at 693.429 kb on - strand, within ABIE53_000637 at 693.429 kb on - strand, within ABIE53_000637 at 693.429 kb on - strand, within ABIE53_000637 at 693.488 kb on + strand, within ABIE53_000637 at 693.488 kb on + strand, within ABIE53_000637 at 693.488 kb on + strand, within ABIE53_000637 at 693.488 kb on + strand, within ABIE53_000637 at 693.488 kb on + strand, within ABIE53_000637 at 693.489 kb on - strand, within ABIE53_000637 at 693.489 kb on - strand, within ABIE53_000637 at 693.489 kb on - strand, within ABIE53_000637 at 693.489 kb on - strand, within ABIE53_000637 at 693.489 kb on - strand, within ABIE53_000637 at 693.489 kb on - strand, within ABIE53_000637 at 693.489 kb on - strand, within ABIE53_000637 at 693.489 kb on - strand, within ABIE53_000637 at 693.570 kb on - strand, within ABIE53_000637 at 693.612 kb on + strand, within ABIE53_000637 at 693.612 kb on + strand, within ABIE53_000637 at 693.612 kb on + strand, within ABIE53_000637 at 693.612 kb on + strand, within ABIE53_000637 at 693.612 kb on + strand, within ABIE53_000637 at 693.612 kb on + strand, within ABIE53_000637 at 693.612 kb on + strand, within ABIE53_000637 at 693.612 kb on + strand, within ABIE53_000637 at 693.612 kb on + strand, within ABIE53_000637 at 693.613 kb on - strand, within ABIE53_000637 at 693.613 kb on - strand, within ABIE53_000637 at 693.613 kb on - strand, within ABIE53_000637 at 693.613 kb on - strand, within ABIE53_000637 at 693.613 kb on - strand, within ABIE53_000637 at 693.613 kb on - strand, within ABIE53_000637 at 693.613 kb on - strand, within ABIE53_000637 at 693.863 kb on + strand at 693.863 kb on + strand at 693.863 kb on + strand at 693.863 kb on + strand at 693.863 kb on + strand at 693.864 kb on - strand at 693.864 kb on - strand at 693.876 kb on + strand at 693.876 kb on + strand at 693.876 kb on + strand at 693.876 kb on + strand at 693.876 kb on + strand at 693.876 kb on + strand at 693.877 kb on - strand at 693.877 kb on - strand at 693.877 kb on - strand at 694.031 kb on + strand, within ABIE53_000638 at 694.032 kb on - strand, within ABIE53_000638 at 694.032 kb on - strand, within ABIE53_000638 at 694.033 kb on + strand, within ABIE53_000638 at 694.033 kb on + strand, within ABIE53_000638 at 694.033 kb on + strand, within ABIE53_000638 at 694.034 kb on - strand, within ABIE53_000638 at 694.034 kb on - strand, within ABIE53_000638 at 694.034 kb on - strand, within ABIE53_000638 at 694.034 kb on - strand, within ABIE53_000638 at 694.414 kb on + strand, within ABIE53_000638 at 694.415 kb on - strand, within ABIE53_000638 at 694.444 kb on + strand, within ABIE53_000638 at 694.444 kb on + strand, within ABIE53_000638 at 694.444 kb on + strand, within ABIE53_000638 at 694.444 kb on + strand, within ABIE53_000638 at 694.444 kb on + strand, within ABIE53_000638 at 694.445 kb on - strand, within ABIE53_000638 at 694.445 kb on - strand, within ABIE53_000638 at 694.445 kb on - strand, within ABIE53_000638 at 694.453 kb on + strand, within ABIE53_000638 at 694.456 kb on + strand at 694.456 kb on + strand at 694.457 kb on - strand at 694.457 kb on - strand at 694.457 kb on - strand at 694.457 kb on - strand at 694.457 kb on - strand at 694.457 kb on - strand at 694.494 kb on + strand at 694.494 kb on + strand at 694.494 kb on + strand at 694.494 kb on + strand at 694.555 kb on - strand at 694.555 kb on - strand at 694.632 kb on + strand at 694.641 kb on + strand at 694.641 kb on + strand at 694.641 kb on + strand at 694.641 kb on + strand at 694.642 kb on - strand at 694.642 kb on - strand at 694.642 kb on - strand at 694.642 kb on - strand at 694.705 kb on - strand at 694.705 kb on - strand at 694.708 kb on + strand at 694.708 kb on + strand at 694.723 kb on - strand at 694.727 kb on + strand at 694.727 kb on + strand at 694.749 kb on - strand at 694.749 kb on - strand at 694.749 kb on - strand at 694.757 kb on - strand at 694.757 kb on - strand at 694.757 kb on - strand at 694.757 kb on - strand at 694.824 kb on + strand at 694.824 kb on + strand at 694.824 kb on + strand at 694.824 kb on + strand at 694.824 kb on + strand at 694.824 kb on + strand at 694.825 kb on - strand at 694.825 kb on - strand at 694.825 kb on - strand at 694.825 kb on - strand at 694.825 kb on - strand at 694.825 kb on - strand at 694.881 kb on + strand at 694.882 kb on - strand at 694.997 kb on + strand at 694.998 kb on - strand at 694.998 kb on - strand at 694.998 kb on - strand at 695.221 kb on - strand at 695.380 kb on + strand at 695.380 kb on + strand at 695.381 kb on - strand at 695.381 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with caffeic 1 mM remove 693,404 + ABIE53_000637 0.47 -0.4 693,404 + ABIE53_000637 0.47 -0.4 693,404 + ABIE53_000637 0.47 -0.6 693,405 - ABIE53_000637 0.47 -0.0 693,428 + ABIE53_000637 0.50 +0.6 693,428 + ABIE53_000637 0.50 +0.6 693,428 + ABIE53_000637 0.50 -1.3 693,428 + ABIE53_000637 0.50 +0.4 693,428 + ABIE53_000637 0.50 -1.3 693,429 - ABIE53_000637 0.50 -2.0 693,429 - ABIE53_000637 0.50 +0.2 693,429 - ABIE53_000637 0.50 +1.0 693,429 - ABIE53_000637 0.50 +0.1 693,488 + ABIE53_000637 0.57 -1.2 693,488 + ABIE53_000637 0.57 -0.9 693,488 + ABIE53_000637 0.57 +1.0 693,488 + ABIE53_000637 0.57 -1.6 693,488 + ABIE53_000637 0.57 -1.2 693,489 - ABIE53_000637 0.57 -1.1 693,489 - ABIE53_000637 0.57 +1.2 693,489 - ABIE53_000637 0.57 +1.0 693,489 - ABIE53_000637 0.57 -0.1 693,489 - ABIE53_000637 0.57 -0.1 693,489 - ABIE53_000637 0.57 -1.1 693,489 - ABIE53_000637 0.57 +2.9 693,489 - ABIE53_000637 0.57 +0.7 693,570 - ABIE53_000637 0.66 +1.0 693,612 + ABIE53_000637 0.71 +0.3 693,612 + ABIE53_000637 0.71 +0.9 693,612 + ABIE53_000637 0.71 -1.7 693,612 + ABIE53_000637 0.71 -0.0 693,612 + ABIE53_000637 0.71 +0.3 693,612 + ABIE53_000637 0.71 +1.6 693,612 + ABIE53_000637 0.71 -0.1 693,612 + ABIE53_000637 0.71 +1.7 693,612 + ABIE53_000637 0.71 +0.4 693,613 - ABIE53_000637 0.71 -0.6 693,613 - ABIE53_000637 0.71 +1.0 693,613 - ABIE53_000637 0.71 +1.1 693,613 - ABIE53_000637 0.71 -1.2 693,613 - ABIE53_000637 0.71 -0.4 693,613 - ABIE53_000637 0.71 +0.3 693,613 - ABIE53_000637 0.71 +0.7 693,863 + -2.2 693,863 + -1.2 693,863 + -0.8 693,863 + -1.1 693,863 + +0.5 693,864 - -2.4 693,864 - +0.9 693,876 + +0.2 693,876 + -0.9 693,876 + -0.4 693,876 + -1.0 693,876 + +1.1 693,876 + +2.2 693,877 - -0.7 693,877 - +0.8 693,877 - +0.2 694,031 + ABIE53_000638 0.21 +1.0 694,032 - ABIE53_000638 0.21 +0.5 694,032 - ABIE53_000638 0.21 +0.3 694,033 + ABIE53_000638 0.21 +1.5 694,033 + ABIE53_000638 0.21 +0.4 694,033 + ABIE53_000638 0.21 -1.7 694,034 - ABIE53_000638 0.21 -1.6 694,034 - ABIE53_000638 0.21 -0.4 694,034 - ABIE53_000638 0.21 +1.0 694,034 - ABIE53_000638 0.21 -1.7 694,414 + ABIE53_000638 0.83 +0.8 694,415 - ABIE53_000638 0.84 -0.4 694,444 + ABIE53_000638 0.88 +1.0 694,444 + ABIE53_000638 0.88 -1.7 694,444 + ABIE53_000638 0.88 +2.0 694,444 + ABIE53_000638 0.88 -0.8 694,444 + ABIE53_000638 0.88 -1.7 694,445 - ABIE53_000638 0.89 -0.2 694,445 - ABIE53_000638 0.89 +2.1 694,445 - ABIE53_000638 0.89 +2.5 694,453 + ABIE53_000638 0.90 -2.9 694,456 + +0.4 694,456 + +0.1 694,457 - -0.0 694,457 - +0.0 694,457 - +0.3 694,457 - -1.4 694,457 - -0.5 694,457 - +1.2 694,494 + -0.1 694,494 + -0.8 694,494 + -1.5 694,494 + -0.5 694,555 - +3.5 694,555 - +0.6 694,632 + -0.6 694,641 + +2.0 694,641 + -1.5 694,641 + -1.4 694,641 + -0.0 694,642 - -0.0 694,642 - +1.0 694,642 - -0.2 694,642 - -0.8 694,705 - +1.5 694,705 - -1.9 694,708 + +0.6 694,708 + +1.0 694,723 - +0.6 694,727 + -2.3 694,727 + -3.9 694,749 - -2.1 694,749 - -0.8 694,749 - -0.6 694,757 - -0.8 694,757 - -0.3 694,757 - -3.0 694,757 - -1.2 694,824 + +1.3 694,824 + -0.9 694,824 + -1.0 694,824 + +1.0 694,824 + +0.4 694,824 + -1.1 694,825 - -1.5 694,825 - -2.4 694,825 - +0.8 694,825 - +0.0 694,825 - -1.7 694,825 - -1.1 694,881 + +0.4 694,882 - -1.5 694,997 + -0.9 694,998 - +1.0 694,998 - +0.1 694,998 - +1.1 695,221 - +0.4 695,380 + +0.4 695,380 + -1.5 695,381 - +1.6 695,381 - +2.3
Or see this region's nucleotide sequence