Experiment: RCH2_defined_glucose_5mM with caffeic 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000566 and ABIE53_000567 are separated by 28 nucleotides ABIE53_000567 and ABIE53_000568 are separated by 114 nucleotides ABIE53_000568 and ABIE53_000569 are separated by 374 nucleotides
ABIE53_000566: ABIE53_000566 - haloacetate dehalogenase, at 618,390 to 619,280
_000566
ABIE53_000567: ABIE53_000567 - Lrp/AsnC family leucine-responsive transcriptional regulator, at 619,309 to 619,779
_000567
ABIE53_000568: ABIE53_000568 - drug/metabolite transporter (DMT)-like permease, at 619,894 to 620,793
_000568
ABIE53_000569: ABIE53_000569 - glyoxylase-like metal-dependent hydrolase (beta-lactamase superfamily II), at 621,168 to 622,106
_000569
Position (kb) 619
620
621 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 618.903 kb on + strand, within ABIE53_000566 at 618.903 kb on + strand, within ABIE53_000566 at 618.904 kb on - strand, within ABIE53_000566 at 618.904 kb on - strand, within ABIE53_000566 at 619.024 kb on - strand, within ABIE53_000566 at 619.082 kb on + strand, within ABIE53_000566 at 619.082 kb on + strand, within ABIE53_000566 at 619.082 kb on + strand, within ABIE53_000566 at 619.082 kb on + strand, within ABIE53_000566 at 619.082 kb on + strand, within ABIE53_000566 at 619.082 kb on + strand, within ABIE53_000566 at 619.083 kb on - strand, within ABIE53_000566 at 619.083 kb on - strand, within ABIE53_000566 at 619.083 kb on - strand, within ABIE53_000566 at 619.083 kb on - strand, within ABIE53_000566 at 619.083 kb on - strand, within ABIE53_000566 at 619.083 kb on - strand, within ABIE53_000566 at 619.083 kb on - strand, within ABIE53_000566 at 619.083 kb on - strand, within ABIE53_000566 at 619.083 kb on - strand, within ABIE53_000566 at 619.083 kb on - strand, within ABIE53_000566 at 619.210 kb on - strand at 619.210 kb on - strand at 619.210 kb on - strand at 619.278 kb on + strand at 619.278 kb on + strand at 619.279 kb on - strand at 619.427 kb on + strand, within ABIE53_000567 at 619.428 kb on - strand, within ABIE53_000567 at 619.720 kb on + strand, within ABIE53_000567 at 619.796 kb on + strand at 619.819 kb on - strand at 619.825 kb on - strand at 619.825 kb on - strand at 619.832 kb on + strand at 619.832 kb on + strand at 619.832 kb on + strand at 619.832 kb on + strand at 619.833 kb on - strand at 619.833 kb on - strand at 619.833 kb on - strand at 619.850 kb on - strand at 619.850 kb on - strand at 619.853 kb on + strand at 619.853 kb on + strand at 619.853 kb on + strand at 619.853 kb on + strand at 619.853 kb on + strand at 619.854 kb on - strand at 619.868 kb on - strand at 619.868 kb on - strand at 619.868 kb on - strand at 619.998 kb on + strand, within ABIE53_000568 at 619.998 kb on + strand, within ABIE53_000568 at 619.998 kb on + strand, within ABIE53_000568 at 619.998 kb on + strand, within ABIE53_000568 at 619.999 kb on - strand, within ABIE53_000568 at 619.999 kb on - strand, within ABIE53_000568 at 619.999 kb on - strand, within ABIE53_000568 at 619.999 kb on - strand, within ABIE53_000568 at 620.048 kb on + strand, within ABIE53_000568 at 620.049 kb on - strand, within ABIE53_000568 at 620.162 kb on - strand, within ABIE53_000568 at 620.162 kb on - strand, within ABIE53_000568 at 620.197 kb on + strand, within ABIE53_000568 at 620.198 kb on - strand, within ABIE53_000568 at 620.198 kb on - strand, within ABIE53_000568 at 620.198 kb on - strand, within ABIE53_000568 at 620.273 kb on + strand, within ABIE53_000568 at 620.273 kb on + strand, within ABIE53_000568 at 620.274 kb on - strand, within ABIE53_000568 at 620.274 kb on - strand, within ABIE53_000568 at 620.274 kb on - strand, within ABIE53_000568 at 620.274 kb on - strand, within ABIE53_000568 at 620.350 kb on + strand, within ABIE53_000568 at 620.351 kb on - strand, within ABIE53_000568 at 620.351 kb on - strand, within ABIE53_000568 at 620.351 kb on - strand, within ABIE53_000568 at 620.368 kb on + strand, within ABIE53_000568 at 620.368 kb on + strand, within ABIE53_000568 at 620.392 kb on + strand, within ABIE53_000568 at 620.392 kb on + strand, within ABIE53_000568 at 620.575 kb on + strand, within ABIE53_000568 at 620.575 kb on + strand, within ABIE53_000568 at 620.575 kb on + strand, within ABIE53_000568 at 620.575 kb on + strand, within ABIE53_000568 at 620.575 kb on + strand, within ABIE53_000568 at 620.575 kb on + strand, within ABIE53_000568 at 620.575 kb on + strand, within ABIE53_000568 at 620.575 kb on + strand, within ABIE53_000568 at 620.575 kb on + strand, within ABIE53_000568 at 620.575 kb on + strand, within ABIE53_000568 at 620.575 kb on + strand, within ABIE53_000568 at 620.575 kb on + strand, within ABIE53_000568 at 620.575 kb on + strand, within ABIE53_000568 at 620.576 kb on - strand, within ABIE53_000568 at 620.576 kb on - strand, within ABIE53_000568 at 620.576 kb on - strand, within ABIE53_000568 at 620.576 kb on - strand, within ABIE53_000568 at 620.576 kb on - strand, within ABIE53_000568 at 620.587 kb on + strand, within ABIE53_000568 at 620.587 kb on + strand, within ABIE53_000568 at 620.641 kb on + strand, within ABIE53_000568 at 620.889 kb on - strand at 620.904 kb on + strand at 620.905 kb on - strand at 620.937 kb on + strand at 621.007 kb on + strand at 621.008 kb on - strand at 621.133 kb on + strand at 621.133 kb on + strand at 621.134 kb on - strand at 621.200 kb on + strand at 621.200 kb on + strand at 621.200 kb on + strand at 621.201 kb on - strand at 621.201 kb on - strand at 621.375 kb on + strand, within ABIE53_000569 at 621.376 kb on - strand, within ABIE53_000569 at 621.467 kb on + strand, within ABIE53_000569 at 621.467 kb on + strand, within ABIE53_000569 at 621.622 kb on - strand, within ABIE53_000569 at 621.640 kb on + strand, within ABIE53_000569 at 621.640 kb on + strand, within ABIE53_000569 at 621.640 kb on + strand, within ABIE53_000569 at 621.640 kb on + strand, within ABIE53_000569 at 621.641 kb on - strand, within ABIE53_000569 at 621.641 kb on - strand, within ABIE53_000569
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with caffeic 1 mM remove 618,903 + ABIE53_000566 0.58 +2.0 618,903 + ABIE53_000566 0.58 -1.7 618,904 - ABIE53_000566 0.58 -0.8 618,904 - ABIE53_000566 0.58 -0.4 619,024 - ABIE53_000566 0.71 -0.1 619,082 + ABIE53_000566 0.78 +0.8 619,082 + ABIE53_000566 0.78 +0.4 619,082 + ABIE53_000566 0.78 +0.3 619,082 + ABIE53_000566 0.78 +0.9 619,082 + ABIE53_000566 0.78 -0.0 619,082 + ABIE53_000566 0.78 -0.4 619,083 - ABIE53_000566 0.78 -0.1 619,083 - ABIE53_000566 0.78 -0.4 619,083 - ABIE53_000566 0.78 +4.0 619,083 - ABIE53_000566 0.78 -0.4 619,083 - ABIE53_000566 0.78 -0.1 619,083 - ABIE53_000566 0.78 -0.6 619,083 - ABIE53_000566 0.78 -0.7 619,083 - ABIE53_000566 0.78 -2.9 619,083 - ABIE53_000566 0.78 +3.0 619,083 - ABIE53_000566 0.78 -2.2 619,210 - -1.0 619,210 - +0.6 619,210 - -0.6 619,278 + +3.0 619,278 + +1.7 619,279 - -1.0 619,427 + ABIE53_000567 0.25 -0.4 619,428 - ABIE53_000567 0.25 -0.5 619,720 + ABIE53_000567 0.87 +0.2 619,796 + +2.0 619,819 - -0.3 619,825 - +0.2 619,825 - +0.4 619,832 + -1.4 619,832 + +1.8 619,832 + +0.2 619,832 + +0.1 619,833 - -2.2 619,833 - -0.6 619,833 - +0.5 619,850 - +0.2 619,850 - +0.7 619,853 + +1.0 619,853 + -1.8 619,853 + -1.4 619,853 + -0.8 619,853 + +0.7 619,854 - -0.3 619,868 - -1.2 619,868 - +0.2 619,868 - -2.1 619,998 + ABIE53_000568 0.12 +2.0 619,998 + ABIE53_000568 0.12 +3.4 619,998 + ABIE53_000568 0.12 -1.5 619,998 + ABIE53_000568 0.12 +0.3 619,999 - ABIE53_000568 0.12 -0.2 619,999 - ABIE53_000568 0.12 +0.8 619,999 - ABIE53_000568 0.12 +0.5 619,999 - ABIE53_000568 0.12 -0.4 620,048 + ABIE53_000568 0.17 +2.4 620,049 - ABIE53_000568 0.17 -1.4 620,162 - ABIE53_000568 0.30 -1.4 620,162 - ABIE53_000568 0.30 -0.6 620,197 + ABIE53_000568 0.34 -1.4 620,198 - ABIE53_000568 0.34 +2.0 620,198 - ABIE53_000568 0.34 +0.2 620,198 - ABIE53_000568 0.34 +0.7 620,273 + ABIE53_000568 0.42 +1.1 620,273 + ABIE53_000568 0.42 -2.0 620,274 - ABIE53_000568 0.42 -0.2 620,274 - ABIE53_000568 0.42 -0.4 620,274 - ABIE53_000568 0.42 -2.0 620,274 - ABIE53_000568 0.42 -1.0 620,350 + ABIE53_000568 0.51 -2.2 620,351 - ABIE53_000568 0.51 +0.2 620,351 - ABIE53_000568 0.51 -0.0 620,351 - ABIE53_000568 0.51 +0.6 620,368 + ABIE53_000568 0.53 -0.0 620,368 + ABIE53_000568 0.53 +0.0 620,392 + ABIE53_000568 0.55 +1.1 620,392 + ABIE53_000568 0.55 -0.2 620,575 + ABIE53_000568 0.76 -0.6 620,575 + ABIE53_000568 0.76 -1.7 620,575 + ABIE53_000568 0.76 +1.3 620,575 + ABIE53_000568 0.76 -0.4 620,575 + ABIE53_000568 0.76 +1.0 620,575 + ABIE53_000568 0.76 -1.5 620,575 + ABIE53_000568 0.76 +0.8 620,575 + ABIE53_000568 0.76 +1.5 620,575 + ABIE53_000568 0.76 +1.8 620,575 + ABIE53_000568 0.76 -2.0 620,575 + ABIE53_000568 0.76 +1.6 620,575 + ABIE53_000568 0.76 +0.4 620,575 + ABIE53_000568 0.76 -0.0 620,576 - ABIE53_000568 0.76 +0.6 620,576 - ABIE53_000568 0.76 -1.4 620,576 - ABIE53_000568 0.76 -0.7 620,576 - ABIE53_000568 0.76 +1.3 620,576 - ABIE53_000568 0.76 -1.4 620,587 + ABIE53_000568 0.77 +0.4 620,587 + ABIE53_000568 0.77 -1.0 620,641 + ABIE53_000568 0.83 +0.3 620,889 - -0.9 620,904 + +1.3 620,905 - +0.6 620,937 + -1.6 621,007 + +0.4 621,008 - +0.4 621,133 + +0.2 621,133 + +0.6 621,134 - -0.2 621,200 + -1.2 621,200 + +0.3 621,200 + -1.9 621,201 - -0.5 621,201 - +1.4 621,375 + ABIE53_000569 0.22 -1.5 621,376 - ABIE53_000569 0.22 -0.4 621,467 + ABIE53_000569 0.32 +0.4 621,467 + ABIE53_000569 0.32 -0.4 621,622 - ABIE53_000569 0.48 -1.0 621,640 + ABIE53_000569 0.50 +2.1 621,640 + ABIE53_000569 0.50 -0.5 621,640 + ABIE53_000569 0.50 +0.7 621,640 + ABIE53_000569 0.50 -0.5 621,641 - ABIE53_000569 0.50 +2.3 621,641 - ABIE53_000569 0.50 -1.4
Or see this region's nucleotide sequence