Strain Fitness in Shewanella oneidensis MR-1 around SO2027.3

Experiment: Survival in PBS at 22C, experiment2, 6 day

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO_2028 and SO_2029 overlap by 7 nucleotidesSO_2029 and SO2027.3 are separated by 155 nucleotidesSO2027.3 and SO2031 overlap by 65 nucleotidesSO2031 and SO2032 are separated by 59 nucleotides SO_2028: SO_2028 - no description, at 2,127,290 to 2,128,105 _2028 SO_2029: SO_2029 - no description, at 2,128,099 to 2,128,365 _2029 SO2027.3: SO2027.3 - hypothetical transposase (NCBI ptt file), at 2,128,521 to 2,128,946 SO2027.3 SO2031: SO2031 - ISSod1, transposase OrfB (NCBI ptt file), at 2,128,882 to 2,129,691 SO2031 SO2032: SO2032 - ISSod1, transposase OrfA (NCBI ptt file), at 2,129,751 to 2,130,041 SO2032 Position (kb) 2128 2129Strain fitness (log2 ratio) -2 -1 0 1at 2128.561 kb on + strandat 2128.579 kb on - strand, within SO2027.3at 2128.612 kb on - strand, within SO2027.3at 2128.622 kb on - strand, within SO2027.3at 2128.756 kb on + strand, within SO2027.3at 2128.837 kb on + strand, within SO2027.3at 2128.878 kb on - strand, within SO2027.3

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival in PBS at 22C, experiment2, 6 day
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2,128,561 + +0.6
2,128,579 - SO2027.3 0.14 -1.6
2,128,612 - SO2027.3 0.21 -2.0
2,128,622 - SO2027.3 0.24 -0.1
2,128,756 + SO2027.3 0.55 -0.5
2,128,837 + SO2027.3 0.74 -0.4
2,128,878 - SO2027.3 0.84 -0.4

Or see this region's nucleotide sequence