Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3249

Experiment: Varel_Bryant_medium_Glucose with Bile salts 0.125 mg/mL; pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Bile salts 0.125 mg/mL; pH 6
4,148,020	-				-0.0
4,148,088	-				-0.6
4,148,098	+				+0.7
4,148,098	+				-0.3
4,148,098	+				-0.1
4,148,098	+				-0.8
4,148,098	+				+0.0
4,148,123	+				-1.9
4,148,144	+				-1.0
4,148,264	+		BT3248	0.15	-0.4
4,148,311	+		BT3248	0.20	+0.3
4,148,312	-		BT3248	0.21	-0.4
4,148,312	-		BT3248	0.21	-0.1
4,148,379	-		BT3248	0.29	-0.4
4,148,408	+		BT3248	0.32	+0.2
4,148,479	+		BT3248	0.41	-1.3
4,148,494	-		BT3248	0.43	-1.7
4,148,494	-		BT3248	0.43	-0.3
4,148,547	+		BT3248	0.49	-0.2
4,148,547	+		BT3248	0.49	-1.2
4,148,548	-		BT3248	0.49	-1.3
4,148,548	-		BT3248	0.49	+1.4
4,148,665	-		BT3248	0.64	-1.2
4,148,666	+		BT3248	0.64	-0.3
4,148,667	-		BT3248	0.64	-1.0
4,148,679	-		BT3248	0.65	+0.3
4,148,787	+		BT3248	0.78	+0.4
4,148,787	+		BT3248	0.78	-0.1
4,148,788	-		BT3248	0.78	-0.2
4,148,788	-		BT3248	0.78	-1.5
4,148,852	+		BT3248	0.86	-0.9
4,148,853	-		BT3248	0.86	-0.6
4,148,883	+				+0.0
4,148,915	-				-0.5
4,148,959	+				-0.6
4,148,959	+				-2.0
4,149,028	-				+0.2
4,149,177	+		BT3249	0.20	-2.5
4,149,281	-		BT3249	0.31	-2.2
4,149,350	+		BT3249	0.38	-1.3
4,149,383	-		BT3249	0.42	+2.3
4,149,383	-		BT3249	0.42	-0.3
4,149,385	+		BT3249	0.42	+0.3
4,149,386	-		BT3249	0.42	+0.6
4,149,576	+		BT3249	0.63	-0.1
4,149,577	-		BT3249	0.63	+1.1
4,149,596	+		BT3249	0.65	-0.3
4,149,638	-		BT3249	0.69	-0.4
4,149,679	-		BT3249	0.74	-0.1
4,149,700	+		BT3249	0.76	-0.2
4,149,700	+		BT3249	0.76	-0.6
4,149,701	-		BT3249	0.76	-0.8
4,149,701	-		BT3249	0.76	-0.6
4,149,924	+				-0.8
4,149,929	+				-0.1
4,149,930	-				-0.3
4,149,930	-				-1.2
4,149,971	+				+0.1
4,149,972	-				-1.3
4,149,972	-				-0.3
4,150,066	-		BT3250	0.20	-1.0
4,150,066	-		BT3250	0.20	-0.8
4,150,066	-		BT3250	0.20	+0.5
4,150,066	-				+3.1
4,150,095	-		BT3250	0.24	+1.0
4,150,102	-		BT3250	0.25	-0.8
4,150,168	-		BT3250	0.34	-0.8
4,150,254	-		BT3250	0.46	-2.8
4,150,280	-		BT3250	0.49	-0.8
4,150,286	+		BT3250	0.50	+0.2
4,150,309	+		BT3250	0.53	+0.7
4,150,350	-		BT3250	0.59	-1.0
4,150,350	-		BT3250	0.59	+0.4
4,150,350	-		BT3250	0.59	-1.9
4,150,350	-		BT3250	0.59	-1.4
4,150,351	+		BT3250	0.59	-0.8
4,150,353	+		BT3250	0.59	-0.6
4,150,406	-		BT3250	0.67	-1.3
4,150,406	-		BT3250	0.67	+1.2
4,150,408	-		BT3250	0.67	+0.7
4,150,412	+		BT3250	0.68	-1.9
4,150,413	-		BT3250	0.68	-0.7
4,150,413	-		BT3250	0.68	-0.2
4,150,418	-		BT3250	0.68	-0.1
4,150,418	-		BT3250	0.68	-0.6
4,150,418	-		BT3250	0.68	-2.5
4,150,418	-		BT3250	0.68	-0.1
4,150,448	-		BT3250	0.73	-0.5
4,150,537	+		BT3250	0.85	-0.4
4,150,538	-		BT3250	0.85	-0.6
4,150,665	-				+1.0
4,150,665	-				-0.4
4,150,667	+				+1.0
4,150,675	-				+0.1
4,150,679	-				-2.3
4,150,689	-				-0.0
4,150,725	+				-0.7
4,150,725	+				-0.5
4,150,730	-				+1.0
4,150,730	-				-1.4
4,150,744	+		BT3251	0.11	+1.5
4,150,744	+		BT3251	0.11	+0.2
4,150,745	-		BT3251	0.11	-0.7
4,150,745	-		BT3251	0.11	-0.1
4,150,750	-		BT3251	0.12	-1.6
4,150,791	-		BT3251	0.21	+0.3
4,150,791	-		BT3251	0.21	-0.0
4,150,794	-		BT3251	0.21	-1.0