Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3213

Experiment: Varel_Bryant_medium_Glucose with Bile salts 0.125 mg/mL; pH 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT3211 and BT3212 are separated by 12 nucleotidesBT3212 and BT3213 are separated by 52 nucleotidesBT3213 and BT3214 are separated by 17 nucleotides BT3211: BT3211 - conserved hypothetical protein (NCBI ptt file), at 4,104,738 to 4,104,971 BT3211 BT3212: BT3212 - putative bacitracin resistance protein (NCBI ptt file), at 4,104,984 to 4,105,778 BT3212 BT3213: BT3213 - tRNA pseudouridine synthase B (NCBI ptt file), at 4,105,831 to 4,106,553 BT3213 BT3214: BT3214 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI ptt file), at 4,106,571 to 4,107,629 BT3214 Position (kb) 4105 4106 4107Strain fitness (log2 ratio) -1 0 1 2at 4104.936 kb on + strand, within BT3211at 4104.936 kb on + strand, within BT3211at 4104.950 kb on + strandat 4105.793 kb on + strandat 4105.898 kb on + strandat 4105.952 kb on + strand, within BT3213at 4106.306 kb on + strand, within BT3213at 4106.306 kb on + strand, within BT3213at 4106.380 kb on + strand, within BT3213at 4106.556 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Bile salts 0.125 mg/mL; pH 6
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4,104,936 + BT3211 0.85 -0.4
4,104,936 + BT3211 0.85 -0.2
4,104,950 + +1.9
4,105,793 + -1.4
4,105,898 + -0.1
4,105,952 + BT3213 0.17 +0.5
4,106,306 + BT3213 0.66 +0.5
4,106,306 + BT3213 0.66 +2.1
4,106,380 + BT3213 0.76 -0.1
4,106,556 + -0.5

Or see this region's nucleotide sequence